mRNA_H-elongata_contig160176.3866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160176.3866.1
Unique NamemRNA_H-elongata_contig160176.3866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig160176.3866.1 vs. uniprot
Match: D7FV22_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV22_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.470e-15
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  266 TKSGSFMRGIAAEARAWSARALAVGG---------TRED-IDPVSMLLPEAATGQRVGGPAGRGPLLRRLQTAVDG 463
            +K+G +MRG+AAEARAWSARAL+            TR D +DPV+MLLP++A G+RVGGP+GRGPLLRRLQT V G
Sbjct:  208 SKTGEYMRGMAAEARAWSARALSGAASVDNSGSSWTRGDPVDPVTMLLPDSAFGERVGGPSGRGPLLRRLQTTVYG 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160176.3866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV22_ECTSI3.470e-1561.84Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160176contigH-elongata_contig160176:714..1421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog2880.D7FV22
KEGG koko:K03357,ko:K18469
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG4567@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160176.3866.1prot_H-elongata_contig160176.3866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160176 874..1317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.7352765-UTR-H-elongata_contig160176:713..8731622929940.7352765-UTR-H-elongata_contig160176:713..873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160176 714..873 +
1691679216.4273922-UTR-H-elongata_contig160176:713..8731691679216.4273922-UTR-H-elongata_contig160176:713..873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160176 714..873 +
1622929940.7673292-UTR-H-elongata_contig160176:1317..14211622929940.7673292-UTR-H-elongata_contig160176:1317..1421Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160176 1318..1421 +
1691679216.4480298-UTR-H-elongata_contig160176:1317..14211691679216.4480298-UTR-H-elongata_contig160176:1317..1421Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160176 1318..1421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.7503552-CDS-H-elongata_contig160176:873..13171622929940.7503552-CDS-H-elongata_contig160176:873..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160176 874..1317 +
1691679216.4384038-CDS-H-elongata_contig160176:873..13171691679216.4384038-CDS-H-elongata_contig160176:873..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160176 874..1317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160176.3866.1

>prot_H-elongata_contig160176.3866.1 ID=prot_H-elongata_contig160176.3866.1|Name=mRNA_H-elongata_contig160176.3866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MAEQTLERRPSRQAIEPTPDHQVPEIHRRLSVAPFTKSGSFMRGIAAEAR
AWSARALAVGGTREDIDPVSMLLPEAATGQRVGGPAGRGPLLRRLQTAVD
GEYRNLAAVARRTEIFSWYLIRSGYIMDRTSCRCHAGAGIITPEKVK*
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mRNA from alignment at H-elongata_contig160176:714..1421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160176.3866.1 ID=mRNA_H-elongata_contig160176.3866.1|Name=mRNA_H-elongata_contig160176.3866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig160176:714..1421+ (Himanthalia elongata Himel1 dioecious)
AGATTCGGTGAATGCGTCCCCGTTCGTCAGCCCTAGGCCACCCGACTCAG
ACCGCGCTCGTGTTTCTTCTTCTCCCTCCGTGGCCTCCTCGTGTTCAAGC
TCACCTCTCGACATCGAGGAGCCCCGACCTGATGACGACGATGATGCATA
TGCCGCGCCCATGGCGGAGCAAACGCTCGAGCGTCGACCGTCGCGACAGG
CAATCGAGCCCACACCAGACCATCAGGTGCCGGAGATCCACCGACGGCTC
TCCGTGGCCCCCTTTACGAAATCAGGGTCGTTTATGAGGGGAATTGCCGC
CGAGGCACGCGCTTGGAGCGCCCGCGCTCTGGCGGTCGGGGGTACCAGAG
AAGACATTGATCCTGTGTCCATGCTTCTTCCGGAGGCTGCCACGGGGCAA
AGGGTTGGCGGCCCGGCAGGGAGGGGTCCACTGCTTCGCAGATTACAAAC
GGCGGTAGATGGTGAATACCGTAATCTCGCAGCAGTAGCGCGACGGACGG
AAATATTTTCCTGGTATTTGATAAGATCGGGCTATATAATGGACCGCACA
AGTTGTAGATGTCATGCGGGGGCGGGCATCATAACTCCTGAAAAGGTAAA
ATAATTGTGTACCCAAATCGGTGTCAATGTGCCAAGAGCCGAATTTGGGG
AGACACGGCGACGCCGCCCTTTTCGCGATCGATCCCCCCCCTCCCCCACC
CCCCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig160176:714..1421+

>mRNA_H-elongata_contig160176.3866.1 ID=mRNA_H-elongata_contig160176.3866.1|Name=mRNA_H-elongata_contig160176.3866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig160176:714..1421+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGCAAACGCTCGAGCGTCGACCGTCGCGACAGGCAATCGAGCC
CACACCAGACCATCAGGTGCCGGAGATCCACCGACGGCTCTCCGTGGCCC
CCTTTACGAAATCAGGGTCGTTTATGAGGGGAATTGCCGCCGAGGCACGC
GCTTGGAGCGCCCGCGCTCTGGCGGTCGGGGGTACCAGAGAAGACATTGA
TCCTGTGTCCATGCTTCTTCCGGAGGCTGCCACGGGGCAAAGGGTTGGCG
GCCCGGCAGGGAGGGGTCCACTGCTTCGCAGATTACAAACGGCGGTAGAT
GGTGAATACCGTAATCTCGCAGCAGTAGCGCGACGGACGGAAATATTTTC
CTGGTATTTGATAAGATCGGGCTATATAATGGACCGCACAAGTTGTAGAT
GTCATGCGGGGGCGGGCATCATAACTCCTGAAAAGGTAAAATAAATGGCG
GAGCAAACGCTCGAGCGTCGACCGTCGCGACAGGCAATCGAGCCCACACC
AGACCATCAGGTGCCGGAGATCCACCGACGGCTCTCCGTGGCCCCCTTTA
CGAAATCAGGGTCGTTTATGAGGGGAATTGCCGCCGAGGCACGCGCTTGG
AGCGCCCGCGCTCTGGCGGTCGGGGGTACCAGAGAAGACATTGATCCTGT
GTCCATGCTTCTTCCGGAGGCTGCCACGGGGCAAAGGGTTGGCGGCCCGG
CAGGGAGGGGTCCACTGCTTCGCAGATTACAAACGGCGGTAGATGGTGAA
TACCGTAATCTCGCAGCAGTAGCGCGACGGACGGAAATATTTTCCTGGTA
TTTGATAAGATCGGGCTATATAATGGACCGCACAAGTTGTAGATGTCATG
CGGGGGCGGGCATCATAACTCCTGAAAAGGTAAAATAA
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