mRNA_H-elongata_contig159542.3839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159542.3839.1
Unique NamemRNA_H-elongata_contig159542.3839.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159542.3839.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.880e-13
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    1 MADWIGAEALPPTLAVIDSESRLHVFELDDGASSEGADEDARAGAVCFAAGSGEAESSYRDLQRMRADWQQERWNSGIGGSTMSLTNSNRSLHMKGMM 294
            M+DW+GAEALPP LAVID E RLHVFELDDGASS G + DA  G       +G+  SS   +   R   +         GS  SL+N++R LHMK ++
Sbjct:  730 MSDWVGAEALPPALAVIDGEKRLHVFELDDGASSSGENLDANGGG---GVSTGDGLSSLVGMLGKRTPTKSST------GSLASLSNASRDLHMKDLV 818
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BLAST of mRNA_H-elongata_contig159542.3839.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.220e-12
Identity = 52/113 (46.02%), Postives = 63/113 (55.75%), Query Frame = 1 
Query:    1 MADWIGAEALPPTLAVIDSESRLHVFELDDGASSEGADEDARAGAVCFAAGS-GEAESSYRDLQRMRADWQQERWNSGIGGSTMSLTNSNRSLHMKGMM-EDSKESDRSTHER 333
            M+DW+GAEALPP LAVID E RLHVFELDDG SS G   DA  G         G+  SS   +   R   +         GS  SL+N++R LHMK ++ +D KE   S  ER
Sbjct:  730 MSDWVGAEALPPALAVIDGEKRLHVFELDDGVSSSGEILDANGGGXXXXXXXXGDGLSSLAGMPGKRTPTKSST------GSLASLSNASRDLHMKDLVGQDGKERPPSPQER 836
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159542.3839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI1.880e-1347.96PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE1.220e-1246.02PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159542contigH-elongata_contig159542:791..1123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue9.4e-13
Seed eggNOG ortholog2880.D7G824
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsKOG1064@1,KOG1064@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.4156516-CDS-H-elongata_contig159542:790..11231622929938.4156516-CDS-H-elongata_contig159542:790..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159542 791..1123 +
1691679215.4172108-CDS-H-elongata_contig159542:790..11231691679215.4172108-CDS-H-elongata_contig159542:790..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159542 791..1123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159542.3839.1prot_H-elongata_contig159542.3839.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159542 791..1123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159542.3839.1

>prot_H-elongata_contig159542.3839.1 ID=prot_H-elongata_contig159542.3839.1|Name=mRNA_H-elongata_contig159542.3839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MADWIGAEALPPTLAVIDSESRLHVFELDDGASSEGADEDARAGAVCFAA
GSGEAESSYRDLQRMRADWQQERWNSGIGGSTMSLTNSNRSLHMKGMMED
SKESDRSTHER
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mRNA from alignment at H-elongata_contig159542:791..1123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159542.3839.1 ID=mRNA_H-elongata_contig159542.3839.1|Name=mRNA_H-elongata_contig159542.3839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig159542:791..1123+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGACTGGATTGGCGCAGAGGCTTTACCGCCCACTCTGGCCGTCAT
CGACTCCGAGTCGCGGCTTCACGTGTTTGAGCTAGACGATGGAGCATCGT
CGGAAGGCGCCGACGAGGACGCCCGTGCCGGTGCTGTTTGCTTTGCCGCT
GGGTCTGGTGAAGCAGAGTCATCTTACCGAGACCTGCAGCGCATGAGGGC
CGATTGGCAACAGGAAAGATGGAACTCGGGGATAGGGGGATCGACCATGT
CGCTGACCAATTCAAATCGAAGCCTGCACATGAAGGGGATGATGGAGGAC
TCCAAAGAGTCGGACCGGTCGACGCACGAGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig159542:791..1123+

>mRNA_H-elongata_contig159542.3839.1 ID=mRNA_H-elongata_contig159542.3839.1|Name=mRNA_H-elongata_contig159542.3839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig159542:791..1123+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGACTGGATTGGCGCAGAGGCTTTACCGCCCACTCTGGCCGTCAT
CGACTCCGAGTCGCGGCTTCACGTGTTTGAGCTAGACGATGGAGCATCGT
CGGAAGGCGCCGACGAGGACGCCCGTGCCGGTGCTGTTTGCTTTGCCGCT
GGGTCTGGTGAAGCAGAGTCATCTTACCGAGACCTGCAGCGCATGAGGGC
CGATTGGCAACAGGAAAGATGGAACTCGGGGATAGGGGGATCGACCATGT
CGCTGACCAATTCAAATCGAAGCCTGCACATGAAGGGGATGATGGAGGAC
TCCAAAGAGTCGGACCGGTCGACGCACGAGCGGATGGCGGACTGGATTGG
CGCAGAGGCTTTACCGCCCACTCTGGCCGTCATCGACTCCGAGTCGCGGC
TTCACGTGTTTGAGCTAGACGATGGAGCATCGTCGGAAGGCGCCGACGAG
GACGCCCGTGCCGGTGCTGTTTGCTTTGCCGCTGGGTCTGGTGAAGCAGA
GTCATCTTACCGAGACCTGCAGCGCATGAGGGCCGATTGGCAACAGGAAA
GATGGAACTCGGGGATAGGGGGATCGACCATGTCGCTGACCAATTCAAAT
CGAAGCCTGCACATGAAGGGGATGATGGAGGACTCCAAAGAGTCGGACCG
GTCGACGCACGAGCGG
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