mRNA_H-elongata_contig159296.3825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159296.3825.1
Unique NamemRNA_H-elongata_contig159296.3825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: D7G3J5_ECTSI (GDP-mannose 6-dehydrogenase n=6 Tax=Phaeophyceae TaxID=2870 RepID=D7G3J5_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.350e-68
Identity = 104/115 (90.43%), Postives = 112/115 (97.39%), Query Frame = 1 
Query:    1 SYANGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISSPEAKTMRVTLDESPNWVSPESLV 345
            +YANGLKISFANCIYGLA+ELDP+IDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKIN+WISS +AK MRV LDESPNWVSP++L+
Sbjct:  215 NYANGLKISFANCIYGLAHELDPSIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINEWISSAKAKNMRVELDESPNWVSPDALM 329
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A6H5KTU6_9PHAE (UDPG_MGDP_dh domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU6_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 8.890e-64
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    1 SYANGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISSPEAKTMRVTLDESPNWVSPESL 342
            +YANGLKISFANCIYGLA+ELDP+IDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKIN+WI++    +++V LDESPNWVSP  L
Sbjct:  128 NYANGLKISFANCIYGLAHELDPSIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINEWITN--TPSLKVELDESPNWVSPSEL 239
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: D7FM80_ECTSI (GDP-mannose 6-dehydrogenase n=3 Tax=Phaeophyceae TaxID=2870 RepID=D7FM80_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 9.260e-62
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 1 
Query:    1 SYANGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISSPEAKTMRVTLDESPNWVSPESL 342
            +YANGLKISFANCIYGLA+ELDP+IDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKIN+WI++    +++V L ESPNWVSP  L
Sbjct:  202 NYANGLKISFANCIYGLAHELDPSIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINEWITN--TPSLKVELTESPNWVSPSEL 313
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A1Q9RSG0_9PSEU (UDP-glucose 6-dehydrogenase n=1 Tax=Pseudonocardia sp. CNS-004 TaxID=1904967 RepID=A0A1Q9RSG0_9PSEU)

HSP 1 Score: 57.0 bits (136), Expect = 9.430e-7
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISS 276
            N  KISF N ++ +A +L   +D   +   V+ +AE  ++ +YG+R GAPYGGVCLPKD       A    V    LS   ++N  + +
Sbjct:  200 NATKISFWNEMWLVAQKLG--VDLDPIAATVARSAEGSINPEYGIRGGAPYGGVCLPKDTQGFLGFADTVGVEMPLLSAVVEVNDRLQA 286
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A561SYJ8_9PSEU (UDPglucose 6-dehydrogenase n=4 Tax=Pseudonocardia TaxID=1847 RepID=A0A561SYJ8_9PSEU)

HSP 1 Score: 56.6 bits (135), Expect = 1.270e-6
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWIS 273
            N  KISF N ++ +A +L   +D   +   V+ +AE  ++ +YG+R GAPYGGVCLPKD       A    V    LS   ++N  ++
Sbjct:  192 NATKISFWNEMWLVAQKLG--LDLDPIAATVARSAEGSINPEYGIRGGAPYGGVCLPKDTQGFLGFADTVGVNMPLLSAVVEVNDRLA 277
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A561SP55_9PSEU (UDPglucose 6-dehydrogenase n=2 Tax=Pseudonocardia TaxID=1847 RepID=A0A561SP55_9PSEU)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-6
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWIS 273
            N  KISF N ++ +A +L   +D   +   V+ +AE  ++ +YG+R GAPYGGVCLPKD       A    V    LS   ++N  ++
Sbjct:  200 NATKISFWNEMWLVAQKLG--LDLDPIAATVARSAEGSINPEYGIRGGAPYGGVCLPKDTQGFLGFADTVGVDMPLLSAVVEVNDRLA 285
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A1Q9RRD6_9PSEU (UDP-glucose 6-dehydrogenase n=4 Tax=Pseudonocardia TaxID=1847 RepID=A0A1Q9RRD6_9PSEU)

HSP 1 Score: 56.6 bits (135), Expect = 1.330e-6
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISS 276
            N  KISF N ++ +A +LD  +D   +   V+ +AE  ++ +YG+R GAPYGGVCLPKD       A    V    LS   + N  +++
Sbjct:  200 NATKISFWNEMWLVAQKLD--LDLDPIAATVARSAEGSINPEYGIRGGAPYGGVCLPKDTCGFLGFAAGIDVDMPLLSAVVETNDRLAA 286
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A2S4XIC0_9ACTN (UDP-glucose 6-dehydrogenase n=5 Tax=Streptomyces TaxID=1883 RepID=A0A2S4XIC0_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-6
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWI 270
            N  KISF N ++ +A  L   +D   +   V+ +AE   +  YG+R GAPYGGVCLPKD      LA   S+    L    K+N  +
Sbjct:  198 NATKISFWNEMWLVAQTLG--LDLDPIAQTVARSAEGSYNPLYGIRGGAPYGGVCLPKDTQGFLGLAESLSLDMPLLKAVVKVNDTL 282
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: UPI00099EE5ED (nucleotide sugar dehydrogenase n=1 Tax=Streptomyces graminilatus TaxID=1464070 RepID=UPI00099EE5ED)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-6
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWIS 273
            N  KISF N ++ ++ EL   +D   +   V+ +AE  ++  YG+R GAPYGGVCLPKD      LA    +    L    ++N  ++
Sbjct:  198 NATKISFWNEMWLVSQELG--LDLDPIAQTVARSAEGSVNPLYGIRGGAPYGGVCLPKDTQGFLGLADSIGLHMPLLKAVVEVNDQLA 283
[Close]
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Match: A0A543DLR3_9PSEU (UDPglucose 6-dehydrogenase n=2 Tax=Pseudonocardia kunmingensis TaxID=630975 RepID=A0A543DLR3_9PSEU)

HSP 1 Score: 55.8 bits (133), Expect = 2.450e-6
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   10 NGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRVGAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISS 276
            N  KISF N ++ +A +L   +D   +   V+ +AE  ++ +YG+R GAPYGGVCLPKD       A    V    LS   + N  +++
Sbjct:  200 NATKISFWNEMWLVAQKLG--VDLDPIAATVARSAEGSINPQYGIRGGAPYGGVCLPKDTQGFLGFADNIGVDMPLLSAVVETNDRLAT 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159296.3825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3J5_ECTSI2.350e-6890.43GDP-mannose 6-dehydrogenase n=6 Tax=Phaeophyceae T... [more]
A0A6H5KTU6_9PHAE8.890e-6485.96UDPG_MGDP_dh domain-containing protein n=1 Tax=Ect... [more]
D7FM80_ECTSI9.260e-6285.09GDP-mannose 6-dehydrogenase n=3 Tax=Phaeophyceae T... [more]
A0A1Q9RSG0_9PSEU9.430e-735.96UDP-glucose 6-dehydrogenase n=1 Tax=Pseudonocardia... [more]
A0A561SYJ8_9PSEU1.270e-636.36UDPglucose 6-dehydrogenase n=4 Tax=Pseudonocardia ... [more]
A0A561SP55_9PSEU1.310e-636.36UDPglucose 6-dehydrogenase n=2 Tax=Pseudonocardia ... [more]
A0A1Q9RRD6_9PSEU1.330e-637.08UDP-glucose 6-dehydrogenase n=4 Tax=Pseudonocardia... [more]
A0A2S4XIC0_9ACTN2.290e-637.93UDP-glucose 6-dehydrogenase n=5 Tax=Streptomyces T... [more]
UPI00099EE5ED2.290e-635.23nucleotide sugar dehydrogenase n=1 Tax=Streptomyce... [more]
A0A543DLR3_9PSEU2.450e-635.96UDPglucose 6-dehydrogenase n=2 Tax=Pseudonocardia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159296contigH-elongata_contig159296:57..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.1986105-CDS-H-elongata_contig159296:56..4071622929937.1986105-CDS-H-elongata_contig159296:56..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159296 57..407 +
1691679214.9430468-CDS-H-elongata_contig159296:56..4071691679214.9430468-CDS-H-elongata_contig159296:56..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159296 57..407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.211371-UTR-H-elongata_contig159296:407..4991622929937.211371-UTR-H-elongata_contig159296:407..499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159296 408..499 +
1691679214.9535031-UTR-H-elongata_contig159296:407..4991691679214.9535031-UTR-H-elongata_contig159296:407..499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159296 408..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159296.3825.1prot_H-elongata_contig159296.3825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159296 57..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159296.3825.1

>prot_H-elongata_contig159296.3825.1 ID=prot_H-elongata_contig159296.3825.1|Name=mRNA_H-elongata_contig159296.3825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
SYANGLKISFANCIYGLANELDPTIDAQKVLYLVSSTAECFLSRKYGLRV
GAPYGGVCLPKDVPELTSLAPEGSVFREFLSGTGKINQWISSPEAKTMRV
TLDESPNWVSPESLVL*
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mRNA from alignment at H-elongata_contig159296:57..499+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159296.3825.1 ID=mRNA_H-elongata_contig159296.3825.1|Name=mRNA_H-elongata_contig159296.3825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=443bp|location=Sequence derived from alignment at H-elongata_contig159296:57..499+ (Himanthalia elongata Himel1 dioecious)
AGCTACGCCAACGGGCTCAAGATCTCATTCGCCAACTGCATCTACGGCCT
GGCAAATGAGCTTGACCCCACTATCGACGCCCAGAAAGTCCTCTACTTGG
TGTCCTCCACGGCCGAGTGTTTCCTAAGCCGCAAGTACGGGCTCCGCGTG
GGAGCCCCATACGGAGGCGTTTGCCTGCCCAAGGACGTGCCAGAACTCAC
CAGTCTGGCGCCCGAGGGATCTGTCTTCCGGGAGTTCCTTTCCGGAACCG
GGAAAATCAACCAATGGATCTCCAGTCCCGAGGCAAAGACAATGCGTGTG
ACTCTCGACGAAAGCCCGAACTGGGTGTCACCAGAGTCGCTCGTCCTCTG
AGTCGGGCAAAGATTCTGCCACATTTTGTGCCAGATCCTTGCATCGCTTA
GCGACATTTTAATATAAGGGGGATTATTAGACCCGACGTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig159296:57..499+

>mRNA_H-elongata_contig159296.3825.1 ID=mRNA_H-elongata_contig159296.3825.1|Name=mRNA_H-elongata_contig159296.3825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig159296:57..499+ (Himanthalia elongata Himel1 dioecious)
AGCTACGCCAACGGGCTCAAGATCTCATTCGCCAACTGCATCTACGGCCT
GGCAAATGAGCTTGACCCCACTATCGACGCCCAGAAAGTCCTCTACTTGG
TGTCCTCCACGGCCGAGTGTTTCCTAAGCCGCAAGTACGGGCTCCGCGTG
GGAGCCCCATACGGAGGCGTTTGCCTGCCCAAGGACGTGCCAGAACTCAC
CAGTCTGGCGCCCGAGGGATCTGTCTTCCGGGAGTTCCTTTCCGGAACCG
GGAAAATCAACCAATGGATCTCCAGTCCCGAGGCAAAGACAATGCGTGTG
ACTCTCGACGAAAGCCCGAACTGGGTGTCACCAGAGTCGCTCGTCCTCTG
AAGCTACGCCAACGGGCTCAAGATCTCATTCGCCAACTGCATCTACGGCC
TGGCAAATGAGCTTGACCCCACTATCGACGCCCAGAAAGTCCTCTACTTG
GTGTCCTCCACGGCCGAGTGTTTCCTAAGCCGCAAGTACGGGCTCCGCGT
GGGAGCCCCATACGGAGGCGTTTGCCTGCCCAAGGACGTGCCAGAACTCA
CCAGTCTGGCGCCCGAGGGATCTGTCTTCCGGGAGTTCCTTTCCGGAACC
GGGAAAATCAACCAATGGATCTCCAGTCCCGAGGCAAAGACAATGCGTGT
GACTCTCGACGAAAGCCCGAACTGGGTGTCACCAGAGTCGCTCGTCCTCT
GA
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