prot_H-elongata_contig158941.3811.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158941.3811.1
Unique Nameprot_H-elongata_contig158941.3811.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
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BLAST of mRNA_H-elongata_contig158941.3811.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 0 
Query:    8 CYHNREDSTADTEYSHGYRYCNTTDPYRTIMSY---PCTDDYT------VSRLNWFSNPDVNLLDKPTGTTDNDCARTIEE 79
            CYH+R++S    EY HGYRYC  +DPYRTIMSY    C  D T      V ++N+FSNP+V  L+KPTGT   D AR IEE
Sbjct:  495 CYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEE 575
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158941.3811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE1.030e-1654.32LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158941contigH-elongata_contig158941:199..435 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158941.3811.1mRNA_H-elongata_contig158941.3811.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158941 199..435 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158941.3811.1 ID=prot_H-elongata_contig158941.3811.1|Name=mRNA_H-elongata_contig158941.3811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
FVPRPCRCYHNREDSTADTEYSHGYRYCNTTDPYRTIMSYPCTDDYTVSR
LNWFSNPDVNLLDKPTGTTDNDCARTIEE
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