prot_H-elongata_contig158804.3807.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig158804.3807.1
Unique Name	prot_H-elongata_contig158804.3807.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	100

Homology

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: D8LDT7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.060e-52
Identity = 83/100 (83.00%), Postives = 86/100 (86.00%), Query Frame = 0

Query:    1 LLPHFPPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            +LP  PP LDGSMAGDVGFDPLGLSSI+GLAGADLYWMREAELKH R+AMLA VGVLWCD  GSLPG PSG NQMKLFWEVWAEKPQ VAAG IF G  E
Sbjct:   51 MLPQ-PPLLDGSMAGDVGFDPLGLSSIAGLAGADLYWMREAELKHGRVAMLATVGVLWCDAFGSLPGFPSGVNQMKLFWEVWAEKPQYVAAGIIFCGIAE 149

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A835Z6T4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.820e-37
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P +LDGS+ GDVGFDPL LS+   L G DLYW REAE+KH RIAMLAV GVL+CDQVGSLPG PSG +QM LFW+V+AEKP +V AG + V  +E
Sbjct:   47 PEKLDGSLPGDVGFDPLNLSATDEL-GLDLYWFREAEVKHGRIAMLAVAGVLFCDQVGSLPGFPSGKDQMDLFWQVFAEKPNVVGAGVVAVSILE 140

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A6T7D3U9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7D3U9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.400e-34
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGT--NQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P +LDGS+AGD GFDPLGLS I G+ GADLYWMREAELKH R+AMLA VGVL+ +  GS+PG P G   +QM +FW+VWAE P  +AA   F   IE
Sbjct:   46 PKKLDGSLAGDAGFDPLGLSEIEGI-GADLYWMREAELKHARVAMLATVGVLFVEGCGSMPGFPEGKGQSQMDVFWDVWAEHPNYIAAALTFFTVIE 141

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: B7G9B9_PHATC (Protein fucoxanthin chlorophyll a/c protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9B9_PHATC)

HSP 1 Score: 122 bits (306), Expect = 8.070e-33
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPG--MPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P  LDGSMAGDVGFDPLGLS+I G+ G DLYW+REAE+KHCR+AM+AV GVLW +  G  PG  M +  +Q   FW++W   PQ +A GFI  G +E
Sbjct:   45 PDLLDGSMAGDVGFDPLGLSTIEGV-GVDLYWLREAEIKHCRVAMMAVAGVLWVELFGPAPGCEMATAKSQTDAFWQLWQAHPQYIAFGFIMTGLVE 140

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S3ZSM0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSM0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.030e-33
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPS--GTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P  LDGSMAGDVGFDPLGLS I  L G DLYW+REAELKH R+AMLA  GV+W +  G LPG P   G +QM +FW+ W E P  + AG +F+  IE
Sbjct:   40 PKNLDGSMAGDVGFDPLGLSEIDDL-GVDLYWLREAELKHGRVAMLAATGVIWVEAFGPLPGWPEADGRSQMDVFWDAWEEHPNAICAGIVFITAIE 135

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2SRG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRG9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.080e-32
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGT--NQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P QLDGSMAGD GFDPLGLS I+ + G DLYWMREAELKH R+AMLA  GVL+ + +GSLPG P G   NQM +FW+VW +KP  V     F+  +E
Sbjct:   52 PAQLDGSMAGDEGFDPLGLSEINDV-GLDLYWMREAELKHGRVAMLAAAGVLFVETIGSLPGWPQGAGKNQMDIFWDVWEQKPNYVVGALCFITVLE 147

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2V5J8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5J8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.880e-32
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPS--GTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            PP LDG++AGD GFDPL LS I+ + G DLYW+REAE+KH R+AM+A  GV+W +  GSLPGMPS  G +QM +FW +WAEKP +V A  +F   IE
Sbjct:   52 PPLLDGTLAGDEGFDPLRLSEINDV-GIDLYWLREAEMKHGRVAMMAAAGVMWVELFGSLPGMPSAEGASQMDVFWTLWAEKPALVGASLVFFTIIE 147

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2YCF3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCF3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.140e-32
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGT--NQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P  LDGSMAGD+GFDPLGLS I+G+ G DLYW+REAE+KHCR+AM+AVVG +W +  G  PG  + T  NQM  FW++W   PQ + AG IF+   E
Sbjct:   23 PELLDGSMAGDLGFDPLGLSEINGV-GVDLYWLREAEIKHCRVAMMAVVGNVWVEAFGPAPGCEAATAKNQMDSFWQLWKVHPQYIVAGLIFIMIAE 118

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: K8YPQ7_NANGC (Light-harvesting complex I chlorophyll a/b binding protein 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPQ7_NANGC)

HSP 1 Score: 120 bits (300), Expect = 7.170e-32
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            P  LDGSMAGDVGFDPLGLS I+ + G DLYW+REAELKHCR+ M+A  G+L+ + VG  PG PS  +QM  FW V+AEKP +V A  + +  +E
Sbjct:   53 PKNLDGSMAGDVGFDPLGLSEINEV-GIDLYWLREAELKHCRLGMMAAAGILFVEAVGPAPGFPSTKSQMDAFWTVYAEKPSLVGAALVAIAILE 146

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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2SRE3_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2SRE3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.880e-32
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 0

Query:    6 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTN--QMKLFWEVWAEKPQIVAAGFIFVGFIE 100
            PP LDGSMAGDVGFDPLGLS+I  + G DLYWMREAE+KHCR+AM+AVVG+L  +  G  PG  + T   QM  FW++W   PQ +AAG I +  IE
Sbjct:   43 PPLLDGSMAGDVGFDPLGLSNIDDV-GIDLYWMREAEIKHCRLAMMAVVGILQVEAFGPAPGCEAATAKCQMDAFWQIWNSHPQYIAAGLIMIMLIE 138

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot

BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LDT7_ECTSI	2.060e-52	83.00	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A835Z6T4_9STRA	6.820e-37	67.37	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A6T7D3U9_9STRA	6.400e-34	62.89	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
B7G9B9_PHATC	8.070e-33	58.76	Protein fucoxanthin chlorophyll a/c protein n=3 Ta...	[more]
A0A7S3ZSM0_9STRA	9.030e-33	59.79	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
A0A7S2SRG9_9STRA	1.080e-32	60.82	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2V5J8_9STRA	2.880e-32	58.76	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2YCF3_9STRA	5.140e-32	57.73	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
K8YPQ7_NANGC	7.170e-32	57.89	Light-harvesting complex I chlorophyll a/b binding...	[more]
A0A7S2SRE3_9STRA	9.880e-32	59.79	Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 2..100 e-value: 3.3E-21 score: 78.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 5..100 e-value: 8.0E-22 score: 78.5
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 6..83
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 5..96
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 6..83

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig158804	contig	H-elongata_contig158804:1001..1300 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig158804.3807.1	mRNA_H-elongata_contig158804.3807.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig158804 1001..1300 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig158804.3807.1 ID=prot_H-elongata_contig158804.3807.1|Name=mRNA_H-elongata_contig158804.3807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
LLPHFPPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAM
LAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln