mRNA_H-elongata_contig158653.3796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig158653.3796.1
Unique Name	mRNA_H-elongata_contig158653.3796.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: D8M2P3_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M2P3_BLAHO)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            REQ+K+ NP++K TEISKVLGE WK++  E K PY +  +ADKE+Y
Sbjct:   41 REQVKKENPELKLTEISKVLGEKWKELSEEEKKPYQDAYEADKEKY 86

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: D7FLE3_ECTSI (ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.540e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1

Query:   10 IKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            +K+ NPDMK TEISKVLG  W++MD   KAP+ ++A  DK RY
Sbjct:   11 VKQENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARY 53

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A6H5JHH0_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1

Query:   10 IKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            +KE NPDMK TEISK+LG  W++MD   KAP+ ++A  DK RY
Sbjct:   51 VKEENPDMKVTEISKLLGARWREMDDNDKAPFQKKADKDKARY 93

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.540e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R Q+K  NP++K TEISKVLGE W K+D   K PY ++A  DK RY
Sbjct:  568 RAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARY 613

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A5J4WWR1_9EUKA (HMG box domain-containing protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WWR1_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 1.110e-6
Identity = 22/46 (47.83%), Postives = 36/46 (78.26%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            +E++K+  P++K T++ K +G+ WK++  E KAPYTE+A+ DKERY
Sbjct:  103 KEELKKETPELKDTDLVKKIGKLWKELSDEDKAPYTEKAEKDKERY 148

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A077WA23_9FUNG (HMG box domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WA23_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 1.640e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R ++KE NPD     + K+LGE WK M  E KAPYT +A+ DK+RY
Sbjct:   41 RPKVKEENPDASFGTLGKILGEKWKAMSDEEKAPYTAKAEEDKKRY 86

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A8H7SBX4_9FUNG (HMG box domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SBX4_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 2.470e-6
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R QIKE NPD     I K+LG+ WK M  + KAPY  +A ADKERY
Sbjct:   44 RAQIKEDNPDASFGTIGKLLGDKWKNMTDDDKAPYVAKANADKERY 89

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A099NXP6_PICKU (Non-histone chromosomal protein 6 n=1 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099NXP6_PICKU)

HSP 1 Score: 47.8 bits (112), Expect = 1.010e-5
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R+ ++  NP +   +I K+LGE WK MDAE +AP+ ++A+ADK+RY
Sbjct:   35 RDVVRAENPGIAFGQIGKLLGEKWKSMDAEKRAPFEQQAEADKKRY 80

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A7S3WG03_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WG03_9SPIT)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R+ I +ANP+ K  ++ K LGE W+KM  E KAPY  + +ADKERY
Sbjct:  134 RQGIMQANPNYKMIDVGKELGERWRKMSDEEKAPYMAKQKADKERY 179

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BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A6P5YH67_DURZI (FACT complex subunit SSRP1 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YH67_DURZI)

HSP 1 Score: 49.3 bits (116), Expect = 1.600e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            RE +K++NP    TE+S++LGE WKK+  E K PY  +A+ D++RY
Sbjct:  447 RENLKKSNPGASFTEVSRILGEKWKKLSEEEKEPYEAKAKLDRKRY 492

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot

BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
D8M2P3_BLAHO	1.270e-8	58.70	Uncharacterized protein n=1 Tax=Blastocystis homin...	[more]
D7FLE3_ECTSI	7.540e-8	58.14	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) t...	[more]
A0A6H5JHH0_9PHAE	1.780e-7	58.14	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FLF8_ECTSI	9.540e-7	56.52	FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sili...	[more]
A0A5J4WWR1_9EUKA	1.110e-6	47.83	HMG box domain-containing protein n=1 Tax=Streblom...	[more]
A0A077WA23_9FUNG	1.640e-6	52.17	HMG box domain-containing protein n=2 Tax=Lichthei...	[more]
A0A8H7SBX4_9FUNG	2.470e-6	56.52	HMG box domain-containing protein n=1 Tax=Mucor ci...	[more]
A0A099NXP6_PICKU	1.010e-5	47.83	Non-histone chromosomal protein 6 n=1 Tax=Pichia k...	[more]
A0A7S3WG03_9SPIT	1.400e-5	52.17	Hypothetical protein n=1 Tax=Strombidinopsis acumi...	[more]
A0A6P5YH67_DURZI	1.600e-5	47.83	FACT complex subunit SSRP1 n=1 Tax=Durio zibethinu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig158653	contig	H-elongata_contig158653:180..317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Ec32 ortholog description	High mobility group domain protein
Ec32 ortholog	Ec-00_005550.1
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	138
Cds size	108
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929934.3829544-UTR-H-elongata_contig158653:179..209	1622929934.3829544-UTR-H-elongata_contig158653:179..209	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig158653 180..209 +
1691679213.7472162-UTR-H-elongata_contig158653:179..209	1691679213.7472162-UTR-H-elongata_contig158653:179..209	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig158653 180..209 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929934.3973653-CDS-H-elongata_contig158653:209..317	1622929934.3973653-CDS-H-elongata_contig158653:209..317	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig158653 210..317 +
1691679213.7580056-CDS-H-elongata_contig158653:209..317	1691679213.7580056-CDS-H-elongata_contig158653:209..317	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig158653 210..317 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig158653.3796.1	prot_H-elongata_contig158653.3796.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig158653 210..317 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig158653:180..317+
coding sequence from alignment at H-elongata_contig158653:180..317+

protein sequence of mRNA_H-elongata_contig158653.3796.1

>prot_H-elongata_contig158653.3796.1 ID=prot_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY

mRNA from alignment at H-elongata_contig158653:180..317+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig158653.3796.1 ID=mRNA_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig158653:180..317+ (Himanthalia elongata Himel1 dioecious)
CGCGAACAGATCAAGGAAGCCAATCCTGACATGAAGCCCACGGAGATAAG
CAAGGTTTTGGGAGAGACTTGGAAAAAGATGGATGCAGAGGCTAAGGCTC
CATACACAGAGCGTGCACAGGCTGACAAAGAACGGTAC

Coding sequence (CDS) from alignment at H-elongata_contig158653:180..317+

>mRNA_H-elongata_contig158653.3796.1 ID=mRNA_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig158653:180..317+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCCCACGGAGATAAGCAAGGTTTTGGGAGAGACTTGGAAAAAGAT
GGATGCAGAGGCTAAGGCTCCATACACAGAGCGTGCACAGGCTGACAAAG
AACGGTACATGAAGCCCACGGAGATAAGCAAGGTTTTGGGAGAGACTTGG
AAAAAGATGGATGCAGAGGCTAAGGCTCCATACACAGAGCGTGCACAGGC
TGACAAAGAACGGTAC