mRNA_H-elongata_contig158286.3782.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158286.3782.1
Unique NamemRNA_H-elongata_contig158286.3782.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158286.3782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158286contigH-elongata_contig158286:81..1337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size306
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158286.3782.1prot_H-elongata_contig158286.3782.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158286 81..1157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.0036697-CDS-H-elongata_contig158286:80..2171622929933.0036697-CDS-H-elongata_contig158286:80..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158286 81..217 +
1691679213.1064093-CDS-H-elongata_contig158286:80..2171691679213.1064093-CDS-H-elongata_contig158286:80..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158286 81..217 +
1622929933.0220954-CDS-H-elongata_contig158286:1141..11571622929933.0220954-CDS-H-elongata_contig158286:1141..1157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158286 1142..1157 +
1691679213.1154716-CDS-H-elongata_contig158286:1141..11571691679213.1154716-CDS-H-elongata_contig158286:1141..1157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158286 1142..1157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.0415502-UTR-H-elongata_contig158286:1157..11651622929933.0415502-UTR-H-elongata_contig158286:1157..1165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158286 1158..1165 +
1691679213.1275802-UTR-H-elongata_contig158286:1157..11651691679213.1275802-UTR-H-elongata_contig158286:1157..1165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158286 1158..1165 +
1622929933.0628364-UTR-H-elongata_contig158286:1192..13371622929933.0628364-UTR-H-elongata_contig158286:1192..1337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158286 1193..1337 +
1691679213.1363487-UTR-H-elongata_contig158286:1192..13371691679213.1363487-UTR-H-elongata_contig158286:1192..1337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158286 1193..1337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158286.3782.1

>prot_H-elongata_contig158286.3782.1 ID=prot_H-elongata_contig158286.3782.1|Name=mRNA_H-elongata_contig158286.3782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
ASAVAVGDVGGLCLEDGVAAAGQGESGHEGGTALPGLSDLASSGRRYNLF
*
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mRNA from alignment at H-elongata_contig158286:81..1337+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158286.3782.1 ID=mRNA_H-elongata_contig158286.3782.1|Name=mRNA_H-elongata_contig158286.3782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1257bp|location=Sequence derived from alignment at H-elongata_contig158286:81..1337+ (Himanthalia elongata Himel1 dioecious)
GCGAGTGCTGTGGCGGTTGGAGACGTTGGTGGGCTCTGCTTGGAGGACGG
TGTAGCTGCTGCGGGGCAGGGAGAGAGCGGTCACGAGGGCGGTACGGCGC
TGCCGGGGCTGAGTGACCTCGCTTCGAGTGGCCGCAGGTATGGAGACGAG
AAAAAATGCAGGGGTTCCATCTGACGCAATTTTGCGTGTACGTGTGTGTA
ATGAGGGAGGGTGGTGACACATTTTCCCCAGAGCATTTCCCCTGATGTCT
ACCTATATCGTGTGTGTAATGATTCTGATTCTGATAGACACCCCTCACGG
CGCTAAGAAGGTGTGGATGTTCGGAGGGTTCGAATGAGTTTAAGGTTTTT
CTAATAAAAATGCAAGATCGCGCTAGTCAGTCGATGCGCGCGTGCGTTTG
TGTGTGTACTTGAAGATAATTTAAAAAGAGAGTAATACTTCGTATCGCGG
GGAACAATTGGCTTGGCATGGCGTTATGTGATGTGATGTGCAGCCGCCCC
AAACCAGCTTATTTAGCCTCCTCCGCCGGTAAGCGATTTGACGATGGACG
TATAGGCTCAACAGCTCATAGATTGACGGCTTACAGACTGATAGACTATT
AATAGCAGATATATATACTGATACTGTATAGGGCCGCGGACTGACCCGCC
TTGGATGCTCTTTGATGGTAGTCATCTAGGGAGTGCCGTAACCGAGAGGG
AATCGTCGCATCCAATCACGTATCGAGAGTGATGCCCTCTCACTTCTTCC
TCCGTCCTCCTCCTCCTCCTCCTCCTCCCCGAAGCATCGTCTCGTGAATT
GTTCCCTTTGTCACCAAGCTGGGGGTCTAGATTCTCTCACCTAGAAGCGC
ACACAAAAACTGCGATTGGTTAGGGGCGCTGTAGAATGTTTCATAAACGA
TATGCTTAGTATTGCGTCAAGTCTTCATTTTCCATCAGTGTATCCAGGTA
GGGCTTCTATAAAGACGAATCAAACAACATAAAAACTTTCGTCCTTCCCG
CCTCCTCCGCCTTGTGTGCGTGTGTTTTCTCATTACCCCCTTCCCTGAAC
AAAATCGGCAGATACAACCTTTTCTGAGCGGGAAGGCTGCCAGGCGTTAT
GCCCAGGGGAAGCGTGCCATGCGGAAGTTTGGCTTTTGGAGGAGCTTTGG
TCACGAGGAGGAAGGAATGCGTGTGTGGTGTTGATGCTCTTGTGTGAGAT
CTTTCATGGATGATACGATGAGATGGTTGTTGATGATCGAGTCGGCATTC
ATTTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig158286:81..1337+

>mRNA_H-elongata_contig158286.3782.1 ID=mRNA_H-elongata_contig158286.3782.1|Name=mRNA_H-elongata_contig158286.3782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig158286:81..1337+ (Himanthalia elongata Himel1 dioecious)
GCGAGTGCTGTGGCGGTTGGAGACGTTGGTGGGCTCTGCTTGGAGGACGG
TGTAGCTGCTGCGGGGCAGGGAGAGAGCGGTCACGAGGGCGGTACGGCGC
TGCCGGGGCTGAGTGACCTCGCTTCGAGTGGCCGCAGGCGAGTGCTGTGG
CGGTTGGAGACGTTGGTGGGCTCTGCTTGGAGGACGGTGTAGCTGCTGCG
GGGCAGGGAGAGAGCGGTCACGAGGGCGGTACGGCGCTGCCGGGGCTGAG
TGACCTCGCTTCGAGTGGCCGCAGATACAACCTTTTCTGAATACAACCTT
TTCTGA
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