mRNA_H-elongata_contig158139.3774.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158139.3774.1
Unique NamemRNA_H-elongata_contig158139.3774.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158139.3774.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 8.110e-29
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 RDLGSSESASVNVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQLTRIEVESVEARIAELERTMMGRAGTMVGG 222
            R+LGS E+A +NVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQ T+ EV  VEARI ELE+TM+ RAG+MVGG
Sbjct:   60 RNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGG 133
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BLAST of mRNA_H-elongata_contig158139.3774.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.260e-27
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 RDLGSSESASVNVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQLTRIEVESVEARIAELERTMMGRAGTMVGGAG 228
            R+LGS E+A +NVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQ T+ EV  VEARI ELE+TM+ RAG+MVGGAG
Sbjct: 1633 RNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAG 1708
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158139.3774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD5_ECTSI8.110e-2979.73GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSR4_9PHAE2.260e-2780.26GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158139contigH-elongata_contig158139:2..1370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGRIP
Ec32 orthologEc-16_003640.1
Exons3
Model size240
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158139.3774.1prot_H-elongata_contig158139.3774.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158139 2..1370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.3149457-CDS-H-elongata_contig158139:1..491622929932.3149457-CDS-H-elongata_contig158139:1..49Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158139 2..49 -
1691679212.876544-CDS-H-elongata_contig158139:1..491691679212.876544-CDS-H-elongata_contig158139:1..49Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158139 2..49 -
1622929932.347879-CDS-H-elongata_contig158139:429..5561622929932.347879-CDS-H-elongata_contig158139:429..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158139 430..556 -
1691679212.885206-CDS-H-elongata_contig158139:429..5561691679212.885206-CDS-H-elongata_contig158139:429..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158139 430..556 -
1622929932.3638325-CDS-H-elongata_contig158139:1305..13701622929932.3638325-CDS-H-elongata_contig158139:1305..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158139 1306..1370 -
1691679212.894282-CDS-H-elongata_contig158139:1305..13701691679212.894282-CDS-H-elongata_contig158139:1305..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158139 1306..1370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158139.3774.1

>prot_H-elongata_contig158139.3774.1 ID=prot_H-elongata_contig158139.3774.1|Name=mRNA_H-elongata_contig158139.3774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RDLGSSESASVNVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQLTRIEV
ESVEARIAELERTMMGRAGTMVGGAGRRVG
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mRNA from alignment at H-elongata_contig158139:2..1370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158139.3774.1 ID=mRNA_H-elongata_contig158139.3774.1|Name=mRNA_H-elongata_contig158139.3774.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1369bp|location=Sequence derived from alignment at H-elongata_contig158139:2..1370- (Himanthalia elongata Himel1 dioecious)
AGGGATCTCGGCTCTAGCGAATCGGCGTCGGTGAACGTCGCTTACCTCAA
ATCCGCGGTGGTGAGGTAAGCTGAAGCGAGATGGTGGTGGAGTTCTAGGA
CTTTTTGGTACGGCGACCGCTACAGTCGCTAGAAGCGCTTCAAACACTGA
CTTCGTTTTGGTATGCCTCGATTGGGCTGTTTACAGATCTCGTTCGTGGC
TCGGCATGCTCAGTGCGTTTATATATTAGATGCCGGTGAGATGGTGATGG
TGGTGTAGCCGAGATTGGCCATTTGTTGTGATTCCTGGAATGATGTCGTA
CCTATTCCCCCTCTTTCCCCGCCCGGACGCACGCTTTCGTTCTTGTATAC
GATACGATACGATAACTCACTAGATTATGCTAATAATATATACTATCCTT
TACGATACCCAACGATACGATACGATATATGTATATATATATGTACCATA
CTGTACTGTATAATAGACTAGATCTATGCTATACTGGACTATACGATATC
ATGCCATACTATATATACCATTCTATATATAAGATACTTTACTCGAATGT
ATTGTACTGTACGATACGCTACGATGTTACTATATACGGTGCTAAGCTAA
GTGCAAGATCGAGATCACAAGGTTAACGTTGCTTCCCCCGATCAAGTGCC
CGAGGCTCGTTCGATTTTTGGCACGAAAGCTTTCAAGAAGGTTGCTCTCG
AAACTCTTGTAGATCTAGCTCTATTATTAGTGTGTTTGTCTAGAGCTAGT
AAAGCATCATCGTATGTTGTCCAAGCGGCCCTCGTCTCGATCCGATCCGT
TATCCTACCGAAAGATATATGTCCACCCGAGACGCTGGGGAGCAGCGGAG
CCTTCTACGCGTGATCTCGACCATCCTTCAGCTGACGAGAATTGAGGTGG
AATCTGTCGAGGCCCGAATCGCCGAGCTGGAGAGGACTATGGTAAGGAGC
TAGAGTATGCACGTGTCTGGTAGGTATGGTACATTACAGTCAAGCATGGA
CGGTATTTTCTGCTACTGAGAGTGACACGTGTTACAGCGGCAAAAGAGAC
CTGTCTTTTGCTTTGGTTTCCCCCCCCTTAGACAAGAGAGAATGACACAC
ACACACATACATAAATATACACACATATACACAGGAAGAAGATTTCGCGA
TTCACTGCGGAGGAGCAGCACCCACGTCCCCTACTGGGATTATTGGGATT
ATCAATGTAGTAACATTTTTTTTCTCGCGTGACGCAACACTTTTTTGTTT
TGTTTTCTATGTCCTTCCTTCAACCCGACCCGACCCGACCTCGTCTGCCC
ACGTGTCGTGTTGTTCCGCAGATGGGGCGCGCCGGCACTATGGTCGGCGG
CGCCGGAAGGAGGGTGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig158139:2..1370-

>mRNA_H-elongata_contig158139.3774.1 ID=mRNA_H-elongata_contig158139.3774.1|Name=mRNA_H-elongata_contig158139.3774.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig158139:2..1370- (Himanthalia elongata Himel1 dioecious)
AGGGATCTCGGCTCTAGCGAATCGGCGTCGGTGAACGTCGCTTACCTCAA
ATCCGCGGTGGTGAGAGGGATCTCGGCTCTAGCGAATCGGCGTCGGTGAA
CGTCGCTTACCTCAAATCCGCGGTGGTGAGATATATGTCCACCCGAGACG
CTGGGGAGCAGCGGAGCCTTCTACGCGTGATCTCGACCATCCTTCAGCTG
ACGAGAATTGAGGTGGAATCTGTCGAGGCCCGAATCGCCGAGCTGGAGAG
GACTATGATATATGTCCACCCGAGACGCTGGGGAGCAGCGGAGCCTTCTA
CGCGTGATCTCGACCATCCTTCAGCTGACGAGAATTGAGGTGGAATCTGT
CGAGGCCCGAATCGCCGAGCTGGAGAGGACTATGATGGGGCGCGCCGGCA
CTATGGTCGGCGGCGCCGGAAGGAGGGTGGGCATGGGGCGCGCCGGCACT
ATGGTCGGCGGCGCCGGAAGGAGGGTGGGC
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