mRNA_H-elongata_contig157931.3765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157931.3765.1
Unique NamemRNA_H-elongata_contig157931.3765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.820e-54
Identity = 92/108 (85.19%), Postives = 103/108 (95.37%), Query Frame = 1
Query:   10 QVAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            +V+++PD  LRK+LKV+FRGE+GVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGG  LWFNKDCVWA+EEYGLVGLLVGLAVY+GVILDVPLPLVVF+KVLG+ LSL
Sbjct:  875 KVSRLPDADLRKRLKVVFRGEDGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGRVLWFNKDCVWADEEYGLVGLLVGLAVYSGVILDVPLPLVVFKKVLGEQLSL 982          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.190e-53
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 1
Query:   13 VAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            V+++PD  LRKKLKV+FRGE+GVDEGGV KEFFQLLTVQLFDQSFGMFVPAGEGG  LWFNKDCVWA+EEYGLVGLLVGLAVY+GVILDVPLPLVVF+K+LG+ LSL
Sbjct: 1387 VSRLPDADLRKKLKVVFRGEDGVDEGGVAKEFFQLLTVQLFDQSFGMFVPAGEGGRVLWFNKDCVWADEEYGLVGLLVGLAVYSGVILDVPLPLVVFKKLLGEQLSL 1493          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7S2R944_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R944_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.520e-31
Identity = 60/102 (58.82%), Postives = 76/102 (74.51%), Query Frame = 1
Query:   10 QVAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVL 315
            Q+  VPD  LRK+LKV F GE+G+DEGGV KEFFQLL  +LF + +GMF   G     LWFN+ C W++ EY LVG+L+GLA+Y GVILDV  PLVV++K+L
Sbjct:  597 QLVSVPDTELRKELKVAFEGEDGIDEGGVRKEFFQLLIERLFSEQYGMFTRVGGS---LWFNQGCTWSDGEYSLVGMLIGLALYNGVILDVHFPLVVYKKLL 695          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7S2R9E4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9E4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.760e-31
Identity = 60/102 (58.82%), Postives = 76/102 (74.51%), Query Frame = 1
Query:   10 QVAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVL 315
            Q+  VPD  LRK+LKV F GE+G+DEGGV KEFFQLL  +LF + +GMF   G     LWFN+ C W++ EY LVG+L+GLA+Y GVILDV  PLVV++K+L
Sbjct:  597 QLVSVPDTELRKELKVAFEGEDGIDEGGVRKEFFQLLIERLFSEQYGMFTRVGGS---LWFNQGCTWSDGEYSLVGMLIGLALYNGVILDVHFPLVVYKKLL 695          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: D7FSE4_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE4_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.330e-30
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1
Query:  115 LLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            L   QLFDQS GMFVPAGE G  LWFNKDCV A+EEYGLVGLLVGLAVY+GVILDVPLPL+ F+++LG+ LSL
Sbjct:    6 LSPTQLFDQSSGMFVPAGEKGRVLWFNKDCVRADEEYGLVGLLVGLAVYSGVILDVPLPLMAFKQILGEQLSL 78          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7S4QMC4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMC4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.530e-29
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   37 LRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDL-WFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            LRK+LKV+F+GE+GVD GGVTKEFFQLL VQLFD + GM+     G   + WFN DC W  + Y LVG+LVGLA+Y GV+LDV  P  V+RK++  PL+L
Sbjct:  120 LRKQLKVVFKGEDGVDAGGVTKEFFQLLAVQLFDINTGMWSTRVGGDEQVTWFNSDCSWNEDGYYLVGILVGLALYNGVLLDVHFPSAVYRKLMALPLAL 219          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7R9YGS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGS3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.890e-28
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   10 QVAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            Q+A VP+  L+K+LKV F GE+GVDEGGV KEF+QL+T Q+FD  FGMF         +WFN+ C W  + Y ++G LV LA+Y GVILD+  P V+++K+LG PLSL
Sbjct:  899 QLAAVPETDLQKELKVRFIGEDGVDEGGVRKEFYQLITEQIFDIQFGMFSRM-MNDRIVWFNQACTWEQDNYKVIGKLVALAIYNGVILDLSFPNVLYKKLLGHPLSL 1005          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7S4ASY0_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ASY0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.520e-28
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1
Query:   13 VAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            VA      LRK LKV+F+GE+G+D GGVTKEFFQLL  +LFD + GM+  +    ++ WFN DC W  E Y LVG+L GLAVY  VILDV  P V++RK+LG PL L
Sbjct:  706 VASASTGELRKSLKVVFKGEDGIDAGGVTKEFFQLLCEKLFDVNTGMWTISEY--NETWFNSDCTWNGEGYYLVGVLCGLAVYNSVILDVHFPRVIYRKLLGIPLGL 810          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7S2XN65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN65_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.020e-28
Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   37 LRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            LRKKL+VIF+ EEGVD GGVT+EFFQLL+  LFD S  ++     G    WFN DC W N+ Y LVG+LVGLA+Y  V+LDV  P+ V+RK+LG PL L
Sbjct:  994 LRKKLRVIFKDEEGVDAGGVTREFFQLLSQDLFDVSSSLWTTQ-YGDQITWFNSDCTWDNDGYELVGILVGLALYNSVLLDVHFPMAVYRKLLGLPLGL 1091          
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Match: A0A7S1U6E2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6E2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.290e-27
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   10 QVAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFGMFVPAGEGGHDLWFNKDCVW--ANEEYGLVGLLVGLAVYAGVILDVPLPLVVFRKVLGQPLSL 333
            Q+   PD  LRK+LKV F GEEGVD+GGV KEFFQL+T QLF   +GMF     G   +WFN DC W  A   + +VG L+ LAVY GVILD+  P V+++K+LGQPL L
Sbjct:  894 QLGGAPDGDLRKELKVRFAGEEGVDQGGVRKEFFQLITEQLFGAEYGMF-SRRLGDRIVWFNPDCTWEEAAGNFRIVGKLLALAVYNGVILDLNFPSVLYKKLLGQPLGL 1002          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157931.3765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWC7_ECTSI1.820e-5485.19HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2Y9_9PHAE1.190e-5385.05HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2R944_9STRA2.520e-3158.82Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2R9E4_9STRA2.760e-3158.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FSE4_ECTSI1.330e-3076.71HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S4QMC4_9STRA3.530e-2959.00Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9YGS3_9STRA1.890e-2853.70Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4ASY0_9STRA3.520e-2856.07Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2XN65_9STRA9.020e-2858.59Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1U6E2_9STRA2.290e-2755.45Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157931contigH-elongata_contig157931:751..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue2.9e-46
Seed eggNOG ortholog2880.D7FWC7
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHECT
Ec32 orthologEc-25_000910.1
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.2842443-CDS-H-elongata_contig157931:750..8791622929931.2842443-CDS-H-elongata_contig157931:750..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157931 751..879 +
1691679212.610597-CDS-H-elongata_contig157931:750..8791691679212.610597-CDS-H-elongata_contig157931:750..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157931 751..879 +
1622929931.303448-CDS-H-elongata_contig157931:1283..14871622929931.303448-CDS-H-elongata_contig157931:1283..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157931 1284..1487 +
1691679212.6290104-CDS-H-elongata_contig157931:1283..14871691679212.6290104-CDS-H-elongata_contig157931:1283..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157931 1284..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157931.3765.1prot_H-elongata_contig157931.3765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157931 751..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157931.3765.1

>prot_H-elongata_contig157931.3765.1 ID=prot_H-elongata_contig157931.3765.1|Name=mRNA_H-elongata_contig157931.3765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
TRFQVAQVPDRHLRKKLKVIFRGEEGVDEGGVTKEFFQLLTVQLFDQSFG
MFVPAGEGGHDLWFNKDCVWANEEYGLVGLLVGLAVYAGVILDVPLPLVV
FRKVLGQPLSL
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mRNA from alignment at H-elongata_contig157931:751..1487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157931.3765.1 ID=mRNA_H-elongata_contig157931.3765.1|Name=mRNA_H-elongata_contig157931.3765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=737bp|location=Sequence derived from alignment at H-elongata_contig157931:751..1487+ (Himanthalia elongata Himel1 dioecious)
ACCCGTTTTCAGGTGGCCCAAGTCCCCGACCGACACCTCCGGAAGAAGCT TAAGGTGATCTTCCGAGGGGAGGAAGGCGTCGACGAGGGCGGGGTCACGA AGGAGTTCTTCCAGCTGCTCACGGTTCAGGTGGAGTGGGTTACGCAGAGG TAGGCGCGTTGTTAAATTGACGTAAAAAACGCAAATGTATATATATATAG TAATACGAGTTACTAAATAGTCTTCAATATGGAATAGGAATTACTCGTGT TTTAAGGATGTATTAGGAGTTACTCGTGTTTTAAGGATGTAATAGGAGTT ACTCGTGTTTTAAGGATGTAATAATGTACCGTAGGAGTTACTCGTGTTTT AAGGTTTAGTCTAATAGGAGTTGTTCTCACTAAATAGTACTGTATTTAAT GTGTAACAGGAGTTACTTGCCTTTAGTACTAAACCATGGGGCGGAGGAGG CGGAACCCTAGAATTCAAACCCTCTTCGAGATTCGACTCGTCCAGCGCCA ATCTCTATCCCCCCTCCCTATTCTATTCTACAGTTGTTTGACCAGTCGTT CGGCATGTTCGTGCCGGCGGGAGAAGGGGGTCACGATCTGTGGTTCAACA AGGACTGCGTCTGGGCCAACGAGGAGTACGGCCTGGTGGGCCTCCTGGTG GGCCTGGCGGTGTACGCCGGGGTGATTCTGGACGTGCCGCTGCCCCTGGT GGTGTTCCGGAAGGTCTTGGGGCAGCCGCTGTCTCTG
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Coding sequence (CDS) from alignment at H-elongata_contig157931:751..1487+

>mRNA_H-elongata_contig157931.3765.1 ID=mRNA_H-elongata_contig157931.3765.1|Name=mRNA_H-elongata_contig157931.3765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig157931:751..1487+ (Himanthalia elongata Himel1 dioecious)
ACCCGTTTTCAGGTGGCCCAAGTCCCCGACCGACACCTCCGGAAGAAGCT
TAAGGTGATCTTCCGAGGGGAGGAAGGCGTCGACGAGGGCGGGGTCACGA
AGGAGTTCTTCCAGCTGCTCACGGTTCAGACCCGTTTTCAGGTGGCCCAA
GTCCCCGACCGACACCTCCGGAAGAAGCTTAAGGTGATCTTCCGAGGGGA
GGAAGGCGTCGACGAGGGCGGGGTCACGAAGGAGTTCTTCCAGCTGCTCA
CGGTTCAGTTGTTTGACCAGTCGTTCGGCATGTTCGTGCCGGCGGGAGAA
GGGGGTCACGATCTGTGGTTCAACAAGGACTGCGTCTGGGCCAACGAGGA
GTACGGCCTGGTGGGCCTCCTGGTGGGCCTGGCGGTGTACGCCGGGGTGA
TTCTGGACGTGCCGCTGCCCCTGGTGGTGTTCCGGAAGGTCTTGGGGCAG
CCGCTGTCTCTGTTGTTTGACCAGTCGTTCGGCATGTTCGTGCCGGCGGG
AGAAGGGGGTCACGATCTGTGGTTCAACAAGGACTGCGTCTGGGCCAACG
AGGAGTACGGCCTGGTGGGCCTCCTGGTGGGCCTGGCGGTGTACGCCGGG
GTGATTCTGGACGTGCCGCTGCCCCTGGTGGTGTTCCGGAAGGTCTTGGG
GCAGCCGCTGTCTCTG
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