mRNA_H-elongata_contig157584.3744.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157584.3744.1
Unique NamemRNA_H-elongata_contig157584.3744.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: D8LF31_ECTSI (Guanine deaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF31_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 3.480e-39
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            YVY GT  DLPLL+WLE H FPVEARF +P+FARK YQK VRRHL  GTTTCSYFASLHLEGTKVLVDVIRGLGQRA+VGKV
Sbjct:   82 YVYRGTGMDLPLLQWLETHTFPVEARFADPSFARKAYQKCVRRHLTCGTTTCSYFASLHLEGTKVLVDVIRGLGQRAYVGKV 163          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A7R9U6L4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6L4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.310e-30
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            Y +TGT  DLPLLEWLE + FP E+RFK+ + ARKVY+++VRRHL  GTTTCSYF +LHLE TK+LVD++R  GQRA+VGKV
Sbjct:   84 YAWTGTGMDLPLLEWLETYTFPGESRFKDLSHARKVYERSVRRHLRAGTTTCSYFGTLHLEATKLLVDIVREAGQRAYVGKV 165          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: W7U1P4_9STRA (Guanine deaminase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.870e-29
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            Y +TGT  +LPLL+WL  + FP EA+F +  FA+ VY K+VRRHLMNGTTTCSYFA+LHLE +K+LVD++R  GQRA+VGKV
Sbjct:  107 YAFTGTGMNLPLLKWLNTYTFPCEAKFADLNFAQDVYSKSVRRHLMNGTTTCSYFATLHLEASKLLVDIVREQGQRAYVGKV 188          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A836CCZ0_9STRA (Guanine deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.330e-29
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            Y +TGT  DLPLL+WLE + FP E+ F++ AFAR VY KAV RHL +GTTTCSYFA++H++  KVLVDV+R  GQRA+VGKV
Sbjct:  413 YAFTGTGMDLPLLQWLEKYTFPCESNFQDVAFARDVYTKAVTRHLRSGTTTCSYFATIHVDACKVLVDVVRRAGQRAYVGKV 494          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A2D4CBA2_PYTIN (Guanine deaminase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBA2_PYTIN)

HSP 1 Score: 112 bits (279), Expect = 3.040e-27
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            + + G    LPLL+WLE + FP E+RFK P FA+ VY+KAV+RHL NGTTTCSYFA++HLE  KVL D+I  LGQR +VGKV
Sbjct:   85 HAFLGVGMHLPLLDWLETYTFPYESRFKCPKFAQSVYKKAVKRHLDNGTTTCSYFATIHLESCKVLSDIIEELGQRGYVGKV 166          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A433Q8H6_9FUNG (Guanine deaminase n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q8H6_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 1.730e-26
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            YVY GT  DLPLL WL  + FP E+ F  P +A  VY++ + R L NGTTTC++FA++HLE TK+LVDVIR  GQRAFVGKV
Sbjct:   86 YVYAGTGLDLPLLNWLSTYTFPRESAFSSPTYALDVYKRVISRFLRNGTTTCAWFATIHLEATKLLVDVIRANGQRAFVGKV 167          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: W4G2Y2_9STRA (Guanine deaminase n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2Y2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.560e-26
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            Y + G    LPLL+WL  + FP EA+F +PA+AR +Y KAV RH++NGTTTCSYFA++HLE  KVL D++  +GQR ++GKV
Sbjct:   76 YSFLGVGMHLPLLDWLNTYTFPHEAKFADPAYARNMYTKAVTRHVLNGTTTCSYFATIHLEACKVLADIVHDIGQRGYLGKV 157          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A507FL98_9FUNG (Guanine deaminase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FL98_9FUNG)

HSP 1 Score: 109 bits (272), Expect = 2.680e-26
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    7 YTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            + GT   LPLL+WLEA+ FP EA+F +P +A   Y+ AV+RHL NGTTTCSYFA++HLE TK LVD++  LGQR  VGKV
Sbjct:   84 FLGTGMHLPLLKWLEAYTFPKEAKFSDPVYAAAHYRTAVKRHLFNGTTTCSYFATIHLESTKALVDIVLELGQRGLVGKV 163          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A662YCG4_9STRA (Guanine deaminase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YCG4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.770e-26
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            Y + G    LPLL+WLE   FP EA+F+   +AR VY+KAVRRHL NGTTTCSYFA++HL+  KVL DV+  LGQR +VGKV
Sbjct:   78 YSFIGVGMHLPLLQWLEQFTFPYEAKFQHVDYARSVYEKAVRRHLHNGTTTCSYFATVHLDACKVLADVVEELGQRGYVGKV 159          
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Match: A0A8K1FFJ0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFJ0_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 4.070e-26
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    7 YTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTTTCSYFASLHLEGTKVLVDVIRGLGQRAFVGKV 246
            + G    LPLL+WL+ + FP EARF+   +AR VY KAVRRHL NGTTTCSYFA++HLE  K L D+I+ +GQR +VGKV
Sbjct:   84 FVGVGMHLPLLDWLQTYTFPYEARFENVKYARSVYSKAVRRHLFNGTTTCSYFATIHLESCKALADIIQEVGQRGYVGKV 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157584.3744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF31_ECTSI3.480e-3982.93Guanine deaminase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7R9U6L4_9STRA1.310e-3067.07Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7U1P4_9STRA3.870e-2964.63Guanine deaminase n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A836CCZ0_9STRA9.330e-2964.63Guanine deaminase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A2D4CBA2_PYTIN3.040e-2762.20Guanine deaminase n=2 Tax=Pythium insidiosum TaxID... [more]
A0A433Q8H6_9FUNG1.730e-2660.98Guanine deaminase n=2 Tax=Jimgerdemannia flammicor... [more]
W4G2Y2_9STRA2.560e-2656.10Guanine deaminase n=6 Tax=Aphanomyces astaci TaxID... [more]
A0A507FL98_9FUNG2.680e-2661.25Guanine deaminase n=1 Tax=Chytriomyces confervae T... [more]
A0A662YCG4_9STRA3.770e-2660.98Guanine deaminase n=2 Tax=Nothophytophthora sp. Ch... [more]
A0A8K1FFJ0_PYTOL4.070e-2660.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157584contigH-elongata_contig157584:97..1117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D8LF31
KEGG rclassRC00204
KEGG koko:K01487
KEGG ReactionR01676
KEGG Pathwayko00230,ko01100,map00230,map01100
EggNOG free text desc.imidazolonepropionase activity
EggNOG OGsCOG0402@1,KOG3968@2759
EC3.5.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.703479-CDS-H-elongata_contig157584:96..2491622929929.703479-CDS-H-elongata_contig157584:96..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157584 97..249 -
1691679212.0011225-CDS-H-elongata_contig157584:96..2491691679212.0011225-CDS-H-elongata_contig157584:96..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157584 97..249 -
1622929929.720172-CDS-H-elongata_contig157584:1012..11171622929929.720172-CDS-H-elongata_contig157584:1012..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157584 1013..1117 -
1691679212.0126262-CDS-H-elongata_contig157584:1012..11171691679212.0126262-CDS-H-elongata_contig157584:1012..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157584 1013..1117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157584.3744.1prot_H-elongata_contig157584.3744.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157584 97..1117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157584.3744.1

>prot_H-elongata_contig157584.3744.1 ID=prot_H-elongata_contig157584.3744.1|Name=mRNA_H-elongata_contig157584.3744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
YVYTGTKTDLPLLEWLEAHAFPVEARFKEPAFARKVYQKAVRRHLMNGTT
TCSYFASLHLEGTKVLVDVIRGLGQRAFVGKVWRS*
back to top

mRNA from alignment at H-elongata_contig157584:97..1117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157584.3744.1 ID=mRNA_H-elongata_contig157584.3744.1|Name=mRNA_H-elongata_contig157584.3744.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-elongata_contig157584:97..1117- (Himanthalia elongata Himel1 dioecious)
TACGTGTACACAGGAACAAAGACGGACTTACCACTGCTGGAGTGGTTAGA AGCCCACGCATTCCCAGTCGAGGCGCGCTTCAAGGAACCGGCCTTCGCCA GGAAGGTCAGCGACAGCGGCGTGGGTGGGTGGTGGTGTTTCAGTGTGTAT TTGTGCATTCACCTACGCTATATCCTAATATACTTCATTACGCAACGAAT GGTCAAGTCAAGTCAAGTCAAGTCAGGTCAAGTCAGGGGGACCAACTATC GTCAGGTTCGAGTGTATCTTACATTAGACTACAATAATACATATGAGCAC AAAATCTGGTTCGCCTTGTTGCACTACGTCGTGTGTGGCGCTGTCACTGT GTCACTGTTTCAAGATCGAGCAGGATTTTCATCGTCGGTGGTTACAGTTA CGATCCGTATTGATCCTCATGGGTGGATCCAGCGTACGAATAGTTAGCTG GGTCAGACATGACGAAAATCCCTCGGAATCGTTGGTTCGATGGTTTGACT TTGGTAATATACAAACACAAACATCGGTCGCCCCGATGGGTCAGTTGGTA ACCTGACGTTGGAACGTGAGTTCAAATCTCGGCGCAGTCACACGAACTGG ATTTTTTTTTCTCACATCGTGCCCAACAATTGGAGAACGACTATTATTTA GTAGGTACAAAAAAAGCGACTTCACGGTCGATAACGGAAAGAGACGGCTG AATCTTTCTCGCGATAAAAAAAATAAGGCAAGCACCGCAGATGGAAGGTG GAGAAATACTGTGACCCCGGCTTGTGCGTCCAAAAGTGTGTCTGACGTCC AGAATAAATGGGATGCTAACACAATAGATCTTTACATTTTATTTTATTTT TTCTAACACGAGTAACAGGTATACCAGAAAGCTGTCCGACGACACCTCAT GAACGGCACGACAACGTGCTCGTACTTTGCCAGCCTTCACCTAGAGGGCA CGAAGGTCCTCGTCGACGTTATCAGGGGACTCGGACAACGAGCGTTTGTG GGGAAGGTGTGGCGCAGTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig157584:97..1117-

>mRNA_H-elongata_contig157584.3744.1 ID=mRNA_H-elongata_contig157584.3744.1|Name=mRNA_H-elongata_contig157584.3744.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig157584:97..1117- (Himanthalia elongata Himel1 dioecious)
TACGTGTACACAGGAACAAAGACGGACTTACCACTGCTGGAGTGGTTAGA
AGCCCACGCATTCCCAGTCGAGGCGCGCTTCAAGGAACCGGCCTTCGCCA
GGAAGTACGTGTACACAGGAACAAAGACGGACTTACCACTGCTGGAGTGG
TTAGAAGCCCACGCATTCCCAGTCGAGGCGCGCTTCAAGGAACCGGCCTT
CGCCAGGAAGGTATACCAGAAAGCTGTCCGACGACACCTCATGAACGGCA
CGACAACGTGCTCGTACTTTGCCAGCCTTCACCTAGAGGGCACGAAGGTC
CTCGTCGACGTTATCAGGGGACTCGGACAACGAGCGTTTGTGGGGAAGGT
GTGGCGCAGTTGAGTATACCAGAAAGCTGTCCGACGACACCTCATGAACG
GCACGACAACGTGCTCGTACTTTGCCAGCCTTCACCTAGAGGGCACGAAG
GTCCTCGTCGACGTTATCAGGGGACTCGGACAACGAGCGTTTGTGGGGAA
GGTGTGGCGCAGTTGA
back to top