mRNA_H-elongata_contig157446.3743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157446.3743.1
Unique NamemRNA_H-elongata_contig157446.3743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.200e-25
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   22 HVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            +VP   RP+I    +QVDNC+SE  NHIVIGYLGSLVA+G IG V VQFMPVGH H+K+DQ FSR
Sbjct:    2 YVPVGKRPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66
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BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-14
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 LQRLFEEHVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            L+RL      P  R +I+ L LQ+DNC+ E  N+IV+ ++G LVA G IG+  V F+ VGH H+K+DQ FSR
Sbjct:   22 LKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
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BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.900e-14
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 LQRLFEEHVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            L+RL      P  R +I+ L LQ+DNC+ E  N+IV+ ++G LVA G IG+  V F+ VGH H+K+DQ FSR
Sbjct:   22 LKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
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BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.030e-14
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 LQRLFEEHVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            L+RL      P  R +I+ L LQ+DNC+ E  N+IV+ ++G LVA G IG+  V F+ VGH H+K+DQ FSR
Sbjct:  134 LKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 205
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BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.590e-13
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 LQRLFEEHVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            L+RL E    P  R  I+ L LQ+DNC+ E  N+IV+ ++G LVA G IG+  V F+ VGH H K DQ FSR
Sbjct:  249 LKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320
[Close]
BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.960e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LQRLFEEHVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            L+RL      P  R  I+   LQ+DNC+ E  N+IV+ ++G LVA G IG   V F+ +GH H+K+DQ FSR
Sbjct:   22 LKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93
[Close]
BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.220e-11
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   49 IRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIGTVSVQFMPVGHIHMKLDQAFSR 216
            I+H   QVDNC SE  N+  +G+ G LVA   I  V + FM VGH HMK+DQ FSR
Sbjct:   14 IQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSR 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157446.3743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KUA0_9PHAE2.200e-2567.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE1.100e-1448.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE3.900e-1448.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE4.030e-1448.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE3.590e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE7.960e-1245.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE7.220e-1153.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157446contigH-elongata_contig157446:81..299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.6512544-CDS-H-elongata_contig157446:80..2991622929929.6512544-CDS-H-elongata_contig157446:80..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157446 81..299 +
1691679211.985925-CDS-H-elongata_contig157446:80..2991691679211.985925-CDS-H-elongata_contig157446:80..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157446 81..299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157446.3743.1prot_H-elongata_contig157446.3743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157446 81..299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157446.3743.1

>prot_H-elongata_contig157446.3743.1 ID=prot_H-elongata_contig157446.3743.1|Name=mRNA_H-elongata_contig157446.3743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
LQRLFEEHVPPRTRPFIRHLMLQVDNCISEKNNHIVIGYLGSLVARGFIG
TVSVQFMPVGHIHMKLDQAFSR*
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mRNA from alignment at H-elongata_contig157446:81..299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157446.3743.1 ID=mRNA_H-elongata_contig157446.3743.1|Name=mRNA_H-elongata_contig157446.3743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig157446:81..299+ (Himanthalia elongata Himel1 dioecious)
TTGCAGCGCCTGTTTGAGGAGCACGTTCCTCCCAGGACGCGGCCGTTTAT
TCGTCACTTGATGCTACAAGTTGACAACTGTATCTCCGAGAAAAATAACC
ACATCGTCATAGGCTACCTCGGGTCCCTCGTTGCTCGCGGCTTTATTGGC
ACCGTCTCCGTCCAGTTCATGCCCGTCGGACACATTCACATGAAGCTCGA
TCAGGCATTTTCCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig157446:81..299+

>mRNA_H-elongata_contig157446.3743.1 ID=mRNA_H-elongata_contig157446.3743.1|Name=mRNA_H-elongata_contig157446.3743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig157446:81..299+ (Himanthalia elongata Himel1 dioecious)
TTGCAGCGCCTGTTTGAGGAGCACGTTCCTCCCAGGACGCGGCCGTTTAT
TCGTCACTTGATGCTACAAGTTGACAACTGTATCTCCGAGAAAAATAACC
ACATCGTCATAGGCTACCTCGGGTCCCTCGTTGCTCGCGGCTTTATTGGC
ACCGTCTCCGTCCAGTTCATGCCCGTCGGACACATTCACATGAAGCTCGA
TCAGGCATTTTCCAGGTGATTGCAGCGCCTGTTTGAGGAGCACGTTCCTC
CCAGGACGCGGCCGTTTATTCGTCACTTGATGCTACAAGTTGACAACTGT
ATCTCCGAGAAAAATAACCACATCGTCATAGGCTACCTCGGGTCCCTCGT
TGCTCGCGGCTTTATTGGCACCGTCTCCGTCCAGTTCATGCCCGTCGGAC
ACATTCACATGAAGCTCGATCAGGCATTTTCCAGGTGA
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