mRNA_H-elongata_contig157359.3736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157359.3736.1
Unique NamemRNA_H-elongata_contig157359.3736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157359.3736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157359contigH-elongata_contig157359:54..742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.2013397-CDS-H-elongata_contig157359:53..1361622929929.2013397-CDS-H-elongata_contig157359:53..136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157359 54..136 +
1691679211.8241096-CDS-H-elongata_contig157359:53..1361691679211.8241096-CDS-H-elongata_contig157359:53..136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157359 54..136 +
1622929929.3463323-CDS-H-elongata_contig157359:663..7421622929929.3463323-CDS-H-elongata_contig157359:663..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157359 664..742 +
1691679211.8313003-CDS-H-elongata_contig157359:663..7421691679211.8313003-CDS-H-elongata_contig157359:663..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157359 664..742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157359.3736.1prot_H-elongata_contig157359.3736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157359 54..742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157359.3736.1

>prot_H-elongata_contig157359.3736.1 ID=prot_H-elongata_contig157359.3736.1|Name=mRNA_H-elongata_contig157359.3736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
SQARGSERLGNSRGQQARSVHLSGGGGGPTIGPVASTLEEPKEIRSRCRW
ARRT
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mRNA from alignment at H-elongata_contig157359:54..742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157359.3736.1 ID=mRNA_H-elongata_contig157359.3736.1|Name=mRNA_H-elongata_contig157359.3736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=689bp|location=Sequence derived from alignment at H-elongata_contig157359:54..742+ (Himanthalia elongata Himel1 dioecious)
TCCCAAGCGCGAGGATCCGAGCGCCTCGGTAACAGCCGCGGGCAGCAAGC
GCGGTCGGTCCACCTCTCAGGCGGAGGAGGTGGGTGAGTAGGTCGCTAGC
GTGGGAGGTGCCGTACGGTAGATAAGACGCGTCGAGCGCCGAAAATTGTA
GGGTGCGGTGAGGTCCAGTATGGTAGATAACCTCGTTCGTCCCTTCTGAC
GTCATCTGGCGTAATTCAACGAAGACGGGCATTGTATTCTTGGCTAGCTT
TTGCGGATGCTCGGGCGAGAGACTGACAAAAAAAAAACACCCCCGCCTCG
CTGTTGCTTTACCGTAGACCGACGCTTACTGTGTTTAGTCTCGTTCGTGT
TGTAATTGTTCTTGGATTATGCTGATTCCCATTTCATATCCCTTCTATTG
TGGTCTGCTGAATGCCTACTCCTTGAAAATACGGTTTGCGCACGTGACCT
TCCCGCAACATAATGGAAACGACAGTCCTGCCGTTTGGTATACATAACAG
TACACGCTAATGCTACAACATTCGGCGTGGTCATATGTTGTCCCACACAA
GCATCGGCCCTTACGCTACTACTGCTACCGTTCCATCTACTGTGCGTAAA
AACAAAAAAGGCCGACGATCGGCCCGGTGGCGTCGACGTTGGAGGAACCG
AAGGAAATTCGCTCAAGGTGTCGGTGGGCCCGGCGCACG
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Coding sequence (CDS) from alignment at H-elongata_contig157359:54..742+

>mRNA_H-elongata_contig157359.3736.1 ID=mRNA_H-elongata_contig157359.3736.1|Name=mRNA_H-elongata_contig157359.3736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig157359:54..742+ (Himanthalia elongata Himel1 dioecious)
TCCCAAGCGCGAGGATCCGAGCGCCTCGGTAACAGCCGCGGGCAGCAAGC
GCGGTCGGTCCACCTCTCAGGCGGAGGAGGTGGTCCCAAGCGCGAGGATC
CGAGCGCCTCGGTAACAGCCGCGGGCAGCAAGCGCGGTCGGTCCACCTCT
CAGGCGGAGGAGGTGGGCCGACGATCGGCCCGGTGGCGTCGACGTTGGAG
GAACCGAAGGAAATTCGCTCAAGGTGTCGGTGGGCCCGGCGCACGGCCGA
CGATCGGCCCGGTGGCGTCGACGTTGGAGGAACCGAAGGAAATTCGCTCA
AGGTGTCGGTGGGCCCGGCGCACG
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