mRNA_H-elongata_contig15681.3704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15681.3704.1
Unique NamemRNA_H-elongata_contig15681.3704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: D7FU75_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU75_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 1.230e-95
Identity = 150/167 (89.82%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:  436 IGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            +GNGG TDKY WTQTLQELSV+V VP+GS+SRDVVCDITKSRLRVG++GQPLL+DGEMYNKVKVDDSFWTLEDGKE+SIALQKENQMEWWKCVVKGD EINTSKVQPENSKL +LDGETRKTVEKMMFDQRQKAQGLPT+DEM KQEML KFMAQHPEMDFSRAKIS
Sbjct:  212 VGNGGSTDKYDWTQTLQELSVVVPVPEGSKSRDVVCDITKSRLRVGLKGQPLLVDGEMYNKVKVDDSFWTLEDGKEVSIALQKENQMEWWKCVVKGDPEINTSKVQPENSKLSELDGETRKTVEKMMFDQRQKAQGLPTADEMSKQEMLGKFMAQHPEMDFSRAKIS 378
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: A0A835Z5V7_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V7_9STRA)

HSP 1 Score: 261 bits (667), Expect = 6.270e-78
Identity = 125/180 (69.44%), Postives = 154/180 (85.56%), Query Frame = 1 
Query:  406 KVDDDGA---PPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            K +D+G     PP GNGG+TD YVWTQTL ELSV + VP G++SRDVVC I++  L+ G++GQP ++DG+++ KV V+DSFWTLED +EISIALQK+NQMEWWK V++GD+EI+T+KVQPENSKL DLD +TRKTVEKMMFDQRQKA GLPT+DEM KQE+LKKFM QHPEMDFS+AKI+
Sbjct:  135 KAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 314
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: G4ZU82_PHYSP (CS domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=G4ZU82_PHYSP)

HSP 1 Score: 258 bits (658), Expect = 1.160e-76
Identity = 124/180 (68.89%), Postives = 150/180 (83.33%), Query Frame = 1 
Query:  397 SEGKVDDDGAPPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            +EG  ++D  PP +GNGG+TDKYVWTQTLQE  V  AVP+G++SR V  +I   +LRVG+RG    +DG +YNKVKVDDSFWTLEDG  I I LQK+NQMEWWK +++GD+EI+T KVQPENSKL DLD +TR+TVEKMMFDQRQKA GLPTSD+M KQE+L+KFMAQHPEMDFS+AKI+
Sbjct:  131 NEGDEEEDNGPPLVGNGGQTDKYVWTQTLQEAQVNFAVPEGTKSRQVDVEIRAGKLRVGLRGAEPFVDGSLYNKVKVDDSFWTLEDGNRICIYLQKDNQMEWWKTIIQGDAEIDTQKVQPENSKLDDLDSDTRQTVEKMMFDQRQKAMGLPTSDDMQKQEILQKFMAQHPEMDFSKAKIN 310
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: A0A6G0XJW0_9STRA (CS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJW0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 4.190e-76
Identity = 122/175 (69.71%), Postives = 144/175 (82.29%), Query Frame = 1 
Query:  412 DDDGAPPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            ++DG PP  GNGGKTD YVWTQTLQE  V + VP+G+ S+ VV D+    L+VG++ QPLLIDGE++ K+KV+DSFWTLED   I + LQKENQMEWWKC++ GD EI+T KVQPENSKL DLDGETR+TVEKMMFDQRQK  GLPTSDEM KQE+L KFMA HPEMDFS+AKI+
Sbjct:  134 ENDGTPPLEGNGGKTDVYVWTQTLQEAQVTIPVPQGTVSKQVVVDLRSKTLKVGLKNQPLLIDGELHKKIKVEDSFWTLEDSNRICVYLQKENQMEWWKCIITGDVEIDTKKVQPENSKLSDLDGETRQTVEKMMFDQRQKQMGLPTSDEMSKQEILNKFMAAHPEMDFSKAKIN 308
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: A0A024TE88_9STRA (CS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE88_9STRA)

HSP 1 Score: 256 bits (654), Expect = 5.740e-76
Identity = 120/174 (68.97%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:  415 DDGAPPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            DDGAPP  GNGGKTD YVWTQTLQE  V + VP+G+ S+ VV D+    L+VG++ QPL++DG+++ K+KV+DSFWTLED   I + LQKENQMEWWKC++ GD EI+T KVQPENSKL DLDGETR+TVEKMMFDQRQK  GLPTSDE+GKQE+L KFM  HPEMDFS+AKI+
Sbjct:  145 DDGAPPLEGNGGKTDNYVWTQTLQEAHVTIPVPQGTTSKQVVVDLRSKTLKVGLKSQPLIVDGDLHKKIKVEDSFWTLEDNNRICVYLQKENQMEWWKCIMVGDVEIDTKKVQPENSKLSDLDGETRQTVEKMMFDQRQKQMGLPTSDELGKQEILNKFMKAHPEMDFSKAKIN 318
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: A0A1W0A2R2_9STRA (Nuclear migration protein nudC n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2R2_9STRA)

HSP 1 Score: 254 bits (649), Expect = 2.490e-75
Identity = 121/166 (72.89%), Postives = 140/166 (84.34%), Query Frame = 1 
Query:  439 GNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            GNGGKT+ YVWTQTLQE  V +AVP G+ SR V  DI    L+VG++GQPLL+DGE++ +VKV+DSFWTLEDG  I I LQKENQMEWWKCV+ GD EINT KVQPENSKL DLDG+TR+TVEKMMFDQRQK  GLPTSDE+ KQE+LKKFM+ HPEMDFS+AKI+
Sbjct:  146 GNGGKTEHYVWTQTLQEAHVSIAVPNGTTSRMVAVDIRAQTLKVGLKGQPLLVDGELHKRVKVEDSFWTLEDGNRICIYLQKENQMEWWKCVINGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMSAHPEMDFSKAKIN 311
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: A0A067CPV9_SAPPC (CS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPV9_SAPPC)

HSP 1 Score: 254 bits (648), Expect = 3.490e-75
Identity = 121/171 (70.76%), Postives = 143/171 (83.63%), Query Frame = 1 
Query:  424 APPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            +PP  GNGGKT+ YVWTQTLQE  V +AVP G+ SR V  DI    L+VG++GQPLL+DGE++ ++KV+DSFWTLEDG  I I LQKENQMEWWK V++GD EINT KVQPENSKL DLDG+TR+TVEKMMFDQRQK  GLPTSDE+ KQE+LKKFMA HPEMDFS+AK++
Sbjct:  141 SPPLEGNGGKTEHYVWTQTLQEAHVSIAVPNGTTSRQVFADIRAKTLKVGLKGQPLLVDGELHKRIKVEDSFWTLEDGNRICIYLQKENQMEWWKNVIQGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMAAHPEMDFSKAKLN 311
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: D0NYI0_PHYIT (Nuclear migration protein nudC, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NYI0_PHYIT)

HSP 1 Score: 253 bits (646), Expect = 5.000e-75
Identity = 120/175 (68.57%), Postives = 147/175 (84.00%), Query Frame = 1 
Query:  412 DDDGAPPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            ++D  PP +GNGG+TDKYVWTQTLQE  +  AVP+G++SR V  +I   +LRVG+RG    +DG +YNKVK+DDSFWTLEDG  I I LQK+NQMEWWK +V+GD+EI+T KVQPENSKL DLD +TR+TVEKMMFDQRQKA GLP+SDEM KQE+L+KFMAQHPEMDFS+AK++
Sbjct:  127 EEDNGPPLVGNGGQTDKYVWTQTLQEAQINFAVPEGTKSRQVDVEIRAGKLRVGLRGGETFVDGPLYNKVKMDDSFWTLEDGNRICIYLQKDNQMEWWKTIVQGDAEIDTQKVQPENSKLDDLDSDTRQTVEKMMFDQRQKAMGLPSSDEMQKQEILQKFMAQHPEMDFSKAKVN 301
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: A0A484DVX6_BRELC (CS domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVX6_BRELC)

HSP 1 Score: 251 bits (641), Expect = 3.690e-74
Identity = 119/175 (68.00%), Postives = 145/175 (82.86%), Query Frame = 1 
Query:  412 DDDGAPPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            D++  P  +GNGG+T+KYVWTQTLQE  V  AVP G++SR V  +I   +LRVG+RG+   +DG +YNKVKVDDSFWTLEDG  I + LQK+NQMEWWK +++GD EI+T KVQPENSKL DLD +TR+TVEKMMFDQRQKA GLPTSD+M KQEML+KFMAQHPEMDFS+AK++
Sbjct:  137 DEESGPSLVGNGGRTEKYVWTQTLQEAQVNFAVPAGTKSRQVDVEIRAGKLRVGLRGENTFVDGNLYNKVKVDDSFWTLEDGNRICVYLQKDNQMEWWKTIIQGDPEIDTQKVQPENSKLNDLDADTRQTVEKMMFDQRQKAMGLPTSDDMQKQEMLQKFMAQHPEMDFSKAKMN 311
[Close]
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Match: K3WSX9_GLOUD (CS domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSX9_GLOUD)

HSP 1 Score: 251 bits (640), Expect = 7.740e-74
Identity = 117/170 (68.82%), Postives = 145/170 (85.29%), Query Frame = 1 
Query:  427 PPPIGNGGKTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLIDGEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKVQPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQHPEMDFSRAKIS 936
            P PIGNGG+TDKYVWTQTLQE  V  AVP+G++SR V  DIT ++L+VG++G    +DG ++ K+KVDDSFWTLEDG  I + LQK+NQMEWWK +++GD+EI+T KVQPENSKL DLD +TR+TVEKMMFDQ+QKA GLPTSD++ KQE+LKKFMAQHPEMDFS+AKI+
Sbjct:  155 PAPIGNGGQTDKYVWTQTLQEAQVNFAVPEGTKSRQVAVDITATKLKVGLKGGETFVDGPLFKKIKVDDSFWTLEDGSRICVYLQKDNQMEWWKTIIQGDAEIDTKKVQPENSKLADLDSDTRQTVEKMMFDQKQKALGLPTSDDIQKQEVLKKFMAQHPEMDFSKAKIN 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15681.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU75_ECTSI1.230e-9589.82CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z5V7_9STRA6.270e-7869.44HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
G4ZU82_PHYSP1.160e-7668.89CS domain-containing protein n=15 Tax=Phytophthora... [more]
A0A6G0XJW0_9STRA4.190e-7669.71CS domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A024TE88_9STRA5.740e-7668.97CS domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A1W0A2R2_9STRA2.490e-7572.89Nuclear migration protein nudC n=1 Tax=Thraustothe... [more]
A0A067CPV9_SAPPC3.490e-7570.76CS domain-containing protein n=2 Tax=Saprolegnia T... [more]
D0NYI0_PHYIT5.000e-7568.57Nuclear migration protein nudC, putative n=1 Tax=P... [more]
A0A484DVX6_BRELC3.690e-7468.00CS domain-containing protein n=1 Tax=Bremia lactuc... [more]
K3WSX9_GLOUD7.740e-7468.82CS domain-containing protein n=1 Tax=Globisporangi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15681contigH-elongata_contig15681:440..6577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue1.4e-82
Seed eggNOG ortholog2880.D7FU75
Preferred namenudc
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006457,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0016043,GO:0022402,GO:0030473,GO:0030705,GO:0031505,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046907,GO:0048285,GO:0051082,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0072384,GO:0098813,GO:0099111,GO:0140014,GO:1903047
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-25_003010.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons11
Model size2114
Cds size939
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15681.3704.1prot_H-elongata_contig15681.3704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15681 1652..6577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.8419354-UTR-H-elongata_contig15681:439..6861622929925.8419354-UTR-H-elongata_contig15681:439..686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15681 440..686 -
1691679210.543703-UTR-H-elongata_contig15681:439..6861691679210.543703-UTR-H-elongata_contig15681:439..686Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15681 440..686 -
1622929925.8582673-UTR-H-elongata_contig15681:713..10161622929925.8582673-UTR-H-elongata_contig15681:713..1016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15681 714..1016 -
1691679210.5566387-UTR-H-elongata_contig15681:713..10161691679210.5566387-UTR-H-elongata_contig15681:713..1016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15681 714..1016 -
1622929925.8699024-UTR-H-elongata_contig15681:1027..16511622929925.8699024-UTR-H-elongata_contig15681:1027..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15681 1028..1651 -
1691679210.566914-UTR-H-elongata_contig15681:1027..16511691679210.566914-UTR-H-elongata_contig15681:1027..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15681 1028..1651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.8831792-CDS-H-elongata_contig15681:1651..16901622929925.8831792-CDS-H-elongata_contig15681:1651..1690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 1652..1690 -
1691679210.5767622-CDS-H-elongata_contig15681:1651..16901691679210.5767622-CDS-H-elongata_contig15681:1651..1690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 1652..1690 -
1622929925.8936558-CDS-H-elongata_contig15681:2118..22021622929925.8936558-CDS-H-elongata_contig15681:2118..2202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 2119..2202 -
1691679210.585738-CDS-H-elongata_contig15681:2118..22021691679210.585738-CDS-H-elongata_contig15681:2118..2202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 2119..2202 -
1622929925.906455-CDS-H-elongata_contig15681:2867..29361622929925.906455-CDS-H-elongata_contig15681:2867..2936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 2868..2936 -
1691679210.597058-CDS-H-elongata_contig15681:2867..29361691679210.597058-CDS-H-elongata_contig15681:2867..2936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 2868..2936 -
1622929925.9318967-CDS-H-elongata_contig15681:3273..33361622929925.9318967-CDS-H-elongata_contig15681:3273..3336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 3274..3336 -
1691679210.6096077-CDS-H-elongata_contig15681:3273..33361691679210.6096077-CDS-H-elongata_contig15681:3273..3336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 3274..3336 -
1622929925.9486306-CDS-H-elongata_contig15681:3578..36621622929925.9486306-CDS-H-elongata_contig15681:3578..3662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 3579..3662 -
1691679210.618906-CDS-H-elongata_contig15681:3578..36621691679210.618906-CDS-H-elongata_contig15681:3578..3662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 3579..3662 -
1622929926.018757-CDS-H-elongata_contig15681:3887..40541622929926.018757-CDS-H-elongata_contig15681:3887..4054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 3888..4054 -
1691679210.638707-CDS-H-elongata_contig15681:3887..40541691679210.638707-CDS-H-elongata_contig15681:3887..4054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 3888..4054 -
1622929926.0329914-CDS-H-elongata_contig15681:4636..48471622929926.0329914-CDS-H-elongata_contig15681:4636..4847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 4637..4847 -
1691679210.6509938-CDS-H-elongata_contig15681:4636..48471691679210.6509938-CDS-H-elongata_contig15681:4636..4847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 4637..4847 -
1622929926.0467794-CDS-H-elongata_contig15681:6006..61081622929926.0467794-CDS-H-elongata_contig15681:6006..6108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 6007..6108 -
1691679210.6613064-CDS-H-elongata_contig15681:6006..61081691679210.6613064-CDS-H-elongata_contig15681:6006..6108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 6007..6108 -
1622929926.0842667-CDS-H-elongata_contig15681:6457..65771622929926.0842667-CDS-H-elongata_contig15681:6457..6577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 6458..6577 -
1691679210.6748052-CDS-H-elongata_contig15681:6457..65771691679210.6748052-CDS-H-elongata_contig15681:6457..6577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15681 6458..6577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15681.3704.1

>prot_H-elongata_contig15681.3704.1 ID=prot_H-elongata_contig15681.3704.1|Name=mRNA_H-elongata_contig15681.3704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
KVVRRQKAVADKEKAERKRAKEANERRRAEKRAATLAKQKEEQEERKRKM
DQQDTPGIVEVGKDGSFDVESAATFDASEWCCFCCPCVSSQQQKAVASTG
ASTEGLHATTPVEVEKKSGSLALPPGGEKKRESEGKVDDDGAPPPIGNGG
KTDKYVWTQTLQELSVIVAVPKGSRSRDVVCDITKSRLRVGMRGQPLLID
GEMYNKVKVDDSFWTLEDGKEISIALQKENQMEWWKCVVKGDSEINTSKV
QPENSKLGDLDGETRKTVEKMMFDQRQKAQGLPTSDEMGKQEMLKKFMAQ
HPEMDFSRAKIS*
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mRNA from alignment at H-elongata_contig15681:440..6577-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15681.3704.1 ID=mRNA_H-elongata_contig15681.3704.1|Name=mRNA_H-elongata_contig15681.3704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6138bp|location=Sequence derived from alignment at H-elongata_contig15681:440..6577- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGCGTCGGCAGAAAGCGGTCGCCGATAAGGAAAAGGCGGAGAG
AAAGAGAGCAAAGGAGGCAAATGAGCGCAGACGAGCGGAGAAACGTGCTG
CGACTCTCGCAAAACAGAAGGTATATCAGTAGAGTGAGTTCCTTCCCCTG
ACCCAGAGTATCTCTTCCTCAGACCGTGCCTTATGGCTGAATGTTACAGT
CACGGTTAGTGTACAACATAGTGTACAACATACCCGTAATCCGCGAAGCG
TGTATGATGTACGCTAAATGCGTTTGGTGGCTGCAATGCCGAGCCTTCCG
TGGTCACGTCAGATACAAAAACCAATCGTGTATGTTACGTAGCGCTCCCT
GTTTAATGATGTGTGTCGTACTTTTTCTTTAAAATGAAATAGCTCACCCC
AACGATGGCTCGCCTTACCCCCTCTCCCCCCCAATCCTCCGCGAACGATA
CATTTCTATCTGGTTGCAGGAGGAACAGGAAGAGCGAAAGAGAAAGATGG
ACCAACAGGACACCCCTGGGATCGTAGAGGTCGGAAAGGACGGCTCGTTC
GATGTCGAGTCTGCGGCAACGGTGAGTCGACTGTGCTGATGTCTAAAAAA
TGAAGGTAACTTGCAAGAGACGACGAGGTTTGACGGGTTCTTTTTTTAGA
TTACCTTGCGCATCATTTTGGTTGCGAAGATGCGGGGTTTCAGGACCCCG
GAAAGAGGCATTTGCCAGCAGTTTTGAGGAAAGTGGCACAATTTGCTGAG
GTTGTCGAAGACCTCAAGAAAGGCACGGATACGGGATCATCCCAGATCGA
GTTGCGATACATCTATATATTTATAAAGCAAAGGATGACGGTGAGAAACA
TGGAGCCGAGAATTTTGGCGCAAGGGCCAGGGCCAACAGAAGAACGCCCT
CGAGATACATGTAAAACCCCCGAGATGCGAGATTACAGCCACTTCTTGTT
CCAGCGGGATATACCCCCGCAAGGCCGCTATGAAGCAGCCTGAATACTCT
TAGGTGTTTGTGGTTGTGTGGGTTAAAGAGCTTGAAAATCTATTGAGCAG
GGAGGCGAATCCCACTGTAGAAACTGTAATTCTAGTGTAGTGTAGATGGA
AAAATCGTGGAAGCGAAATGTTTGGGAGTGGACAAGCAAGCCTATTGCAG
AACTGCTGTTGTTCGACGACTGTGGTCGAGCAATCGAGCCTAGAGGAAGC
CTCCAGTTGTGCTAGTTCCCCACGCAAACACCACCCTTCCAATCGTAGCC
CTAACATACTCTAACCTCTGCTCACCGATCACTTCAAGCGCTCAGCAGAA
GCAACTAGGAGGGGAAATTAACAGTTGTGATGAAGGGCTGATGAAGCTCC
TCATGGCTACTAGAAGGAAACGTTATCTGCGCGACTAAACTTGCGATCCA
TTTAGGCTCATAGGCAGTCACCCCGGGGAGTGACGGGGAAGTCTTCGAAG
AGCGGCCGAGGGCGCGTGGGGAAAGGGCAGGGTGATCTTCAATTAGAGTC
TTGAACTGGTGCACTCTGGCCTATCCCTATCCGTATTATCCTTTGCAAAG
CATATAGCTAATAGGAAAAATAATCGAAGTCATCCGAGCGGGTGGCATGC
CTCCCCCCTCGTTACCGGGTATGAAACGCCTCTCTATAAAATAGCTTAAT
CTGTGCAGCTTCGTCACAGCACAAACATCCGGTATAGATCGTTGGTTGTT
TCTGCATCACACTGTTTCACCAGGAGCAAGTTCGATGCATCGGAATGGTG
CTGTTTTTGTTGCCCATGTGTCTCGTCGCAGCAGCAGAAGGCGGTCGCCT
CCACCGGGGCCTCAACGGAGGGGTTACATGCCACAACGCCGGTGGAGGTG
GAGAAAAAGAGTGGTTCGTTAGCGTTGCCGCCCGGCGGGGAAAAGAAACG
AGAAAGCGAAGGAAAGGTGGACGATGATGGCGCGCCCCCTCGTGAGTCGT
CCTCATCTTATCGCGAGACTCAAGGCTTATATTGCGTTGCGTGGCGTTGC
GTTGGATGAACTGTCCTGTTCGGAGAGCTCAGGGTGTTTGAAGCCTACGG
CCAGCGAGCACTCGTGACGGTCGCGTTGTGGTTGAATTTTGTTTACTCGG
GAGTACGGCCGTCACCAACACCCATCGCTTCTTCCTCCTTGCTCATCCCA
GACACCCATAATCTCCATTTACGTGCTAGTCTGTTACTGTGCCGATGAAT
TTTGAAGTCGCGCCCGATCTTAGTCCGACACATCTATTGGATGAATATTA
AATGTACTCTGTTAGTAGTGGTGCACAAGGATACTCAAGCCTGAATTGTC
TCTACCGCGCGAAAAACACAGCCTGTTTTATCTATAGCACGCGCTTAGGT
CTATTAATGGTCTGGGTGTAATAAGAGTCTTACGTAATGGTTTATGACGG
CGGCAAGAGATAATTTTCTTGACCGTGATTTTTTCAGGGTTAGCGATGGA
AATGATTTTCGGTCTGATTTTGATTTTGATCGGATCTTACTCTATTGTAA
TCGAAACGCTGTTGTGGACAAAGCAATCGGCAACGGAGGCAAGACGGACA
AGTACGTGTGGACACAGACGCTGCAAGAGCTGAGCGTGATTGTGGCCGTG
CCTAAGGGCTCCAGGTCTCGAGACGTCGTCTGCGACATCACGAAGTCGCG
TCTGCGCGTTGGGATGAGGGGTCAGCCGCTCCTGATCGATGTGAGTGGGA
AGGAGACGAGGGGGGGCGGGGGGTATGTATGTGTTTTGTTGTTTTGATGG
CGTATAATCAACCGCGCAGGTGCTATCATGGAGGCGATTTGAGGTGGCAG
GGGCGACGCCATTCTAGACTACTCCTTAACCCCCTTTGATTTAGGCCGTG
AGTGAGCTATACCATTAACGTTGGTGGTGACGTGTATGGTGTATGATACG
AACCCGATGATGCAGGGGGAGATGTACAACAAGGTCAAGGTGGACGATAG
TTTCTGGACGCTTGAAGACGGGAAGGAAATCAGCATCGCGCTGCAAAAGG
TTAGCGCGTCACGCGAGAGGTCAAGCGCGAACGATTTGCGATCATAGTCT
TTGCCCTTTGGCCCTTTGGTTGTAGTATGGCTTTGGAAAGAGCGGCAAGG
AAGGGTCACCTGGTTCCCAGCGGAAGGATGTTTGAAGAGTGTGGCCCCCA
TCAGCAGGTTCACGTGACCACATGACGCTAATGTAATAGTTTCCGTTTCG
CTGCTTCTCTCGCCTTATATATCATCGCCTCCACACCACAGGAAAACCAG
ATGGAGTGGTGGAAATGTGTGGTGAAGGGTGACTCAGAGATCAACACCTC
CAAGGTGAGTGCCGGAAGGTTCATCCCAAGGTCCGCCTGCCCTTGATGTA
GACAGAGGAAGAAGCGAGGGATATATGCGCACGGCCGCTCTCAGCCAACG
GGAGGCGTGGTCTGGACGGCACTAGGTATCGACGACGGCGACAAGGAGGT
TGAAGTCTGGGCGGCACTCCGCCTCGATTAAAATTTTAAAACAGTTTTGT
CGTCACGAGTCTGTGATCATCTATAGCTCTACATGAGGACATCATTATAG
AGGCTATATCTTAATACTCTATATATCCACGTCGGCGATGCACACTGTTC
GTATCCCCTCCCCTCTCTCATATATCTGGTACTGTATATAGGTTCAGCCC
GAGAACAGCAAGTTGGGCGACCTCGATGGAGAGACGAGGAAGACAGTGGA
GAAGATGATGGTGGGTGATGTTACATGGGCCACCGTAAACTAGTCCAAAC
GATTCGAATCCTTTTGCTCTATGAGGACTGCTCCGCTCGAGCCACTCTTG
AGCTGCTTTTTTTGTTTGTCTCGCCTCTCACAAGATTATAGTATAGTATA
TTATAGAAATAGATCTCGAAGCTCTCTCGTGCAAGGAATTTTCCTGGCTT
GACTGTTTTCTTTGAAACGACTGTTTAGAAGCTACCTATGGTTCCCTCTG
TTTTCTTTGAAAGTCTGTTGGGGGTTTCTTTTTGAAACTTCGAGGCCTTT
GATGTTTGACCTTGACTCGGCGGTCCACGTGATGTGATATAGCCATAGTC
ATGGACAAGGCATTCGCCCGTTTTTCTTGTTCTAGAGGTATCTGAGACGA
CCGGGGGAGGGTGGCGGCAGGGTCTGTGGATCCTATACATGGACGAGGTT
ATCGTGGCGAATAGCGATTCGTGTTATATCAAGATAAGGTATCCCTAGTA
CCGAGATATATCGCGCGATCTGGCATGTGTGTCTCTGTGTGTGTATATTT
GGAGACGCATTTACCAGTAAAAGGTTGGGTGAAGGTTTCTCCTCCGTCAA
CCCTTGCGATTCCATGCGATGCTATGCTATGCGATCGACGTGTCATGTGT
AACGTGTCCGCCGTGATTCCTCCAGTTTGATCAGCGCCAGAAGGCACAGG
GCCTACCGACATCGGACGAGATGGGCAAGCAGGAGATGCTCAAGAAATTC
ATGGCGCAGGTGCGCCGATTCACTTGTTTACAGCGCACTGGACGCCGCAT
TCTTTTCGTTCCCTCCTTGTGGATTTACTTTCTCCGCGGTTTATGATCTA
TGGCATCCTTTTGCTGTCGATGCTACCTTCACAACGCTTGACCGCCACGA
ACCGCGTTTCTGTAAAATATTGAGCGCATGGAATGACCAAGCCGCATCGA
CGGGGGGGCGCATAGTTTTTTACTGTTGTCGCACACCGTTATCGTTATCA
TTATCTCCATTCTTGCACCGAAATGTTAATGTTTCTAGCTATTAATAGTA
GCTGGTCTGAGATTTTTGCGCTGTACGAATGTTGCGGGTTTATTTGTGAC
CATGATGCGGTCTTCGTAACCACGCTGATATTCCCTCTACCCCTTTTACC
CTCTACCGTACCGCTTGAACACCTTTTTGGACCGCAGCACCCGGAGATGG
ACTTCTCACGTGCCAAGATATCGTAAGGAGGTGTGAGGAGGCGTGACCAG
GCCCATCGCGCGAACTTCTCCACTTTTTCTTCGCCTTGTTAATGCGGGCG
ATCTCGCTATCAATAGACGCCACGGGAACCCTATTTTTGTTTTGTTTAAA
TTTGTTTTTTTCGTCTACATGTAGAGCGAGCTCGATTAGTTATGCTACTA
CTGTGGTCACCACGTGAGTAATAATCATTATATAGACCAACTATGGACCA
ACCACATAGGGTTGCCAACCCTGCTCGTCTGTAGTGGCCTGATGGTATGA
TTAGCTCCACTGCAGGGGCCTAATGGTGTGCCATCGGCTTGCGGCTTCGT
GGGGGTCCGGTGGGCATCCTTTCGGTGCGATGGACTCGTCCCTGTCGGAG
CTCTGCGGGTTGAAATATTTATTTTGCAATCCACTGCCCTGTGAGACGAT
CTGATTGGTCTATCCTGGCACCCACAGTCATCTGCTCTTCCGTTGTTCTC
TGAAATGGAAAGCATGATCATAATGATAATACGTACTGGTACTTCGTATG
TTTTCAAATTATAAAAATACCATGGTATATGATACCTTGACCCAGTAGCA
TGGGTCGCACGTGCGTGTCGAATGCATGCATTATCTGTTCTATGCACCAC
CACTGCTGGTTGTCATTTTGACCCCTTATTTGATGGGATGGGATGGGATG
GGATGGGATGAAGCTCAAAATCTTGTCGCGCGTATTGTACGTGCCAAATT
TTGGTGAGTTTTATCACGATCTTGTCTGGAATAGGTTGGTGATGCAAACT
TTTTCTCGATTTAAGATGCCATAGACGACGCGGCGGTCAATTTCCCACCA
CGGAAATTGTGATCGAGGGGTCTATAAAGTCTCATCTCCCGGAGGGCTTC
AGACCTCTCGAATAAATTATGTGTAGCCGAACCACCTATACTAGTCAGCC
ACTCATTTTTGGGCGACAGGTTCATCCACGGGTGGGCCATGATCGCTTTG
GCGAATTATTTTTATTTTTAAAACCTTGAACGCATTCCAACCCTCCGAAC
ATCCACACCTTCTTAGCACCTGAGATCCAGGAGACCAACTATCGTCAGGT
TCGAATGTGTACATTATTATTAAAAAACCTCCGAACATCCACCACGCCTT
CTTAACGCCGTGAGAGGTGCAGTCCAGGGGATTAATTGTCGTCAAGTTGG
AATGTGGACATTATTACGACCTTTGAATTATTACGACC
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Coding sequence (CDS) from alignment at H-elongata_contig15681:440..6577-

>mRNA_H-elongata_contig15681.3704.1 ID=mRNA_H-elongata_contig15681.3704.1|Name=mRNA_H-elongata_contig15681.3704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig15681:440..6577- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGCGTCGGCAGAAAGCGGTCGCCGATAAGGAAAAGGCGGAGAG
AAAGAGAGCAAAGGAGGCAAATGAGCGCAGACGAGCGGAGAAACGTGCTG
CGACTCTCGCAAAACAGAAGAAGGTGGTGCGTCGGCAGAAAGCGGTCGCC
GATAAGGAAAAGGCGGAGAGAAAGAGAGCAAAGGAGGCAAATGAGCGCAG
ACGAGCGGAGAAACGTGCTGCGACTCTCGCAAAACAGAAGGAGGAACAGG
AAGAGCGAAAGAGAAAGATGGACCAACAGGACACCCCTGGGATCGTAGAG
GTCGGAAAGGACGGCTCGTTCGATGTCGAGTCTGCGGCAACGGAGGAACA
GGAAGAGCGAAAGAGAAAGATGGACCAACAGGACACCCCTGGGATCGTAG
AGGTCGGAAAGGACGGCTCGTTCGATGTCGAGTCTGCGGCAACGTTCGAT
GCATCGGAATGGTGCTGTTTTTGTTGCCCATGTGTCTCGTCGCAGCAGCA
GAAGGCGGTCGCCTCCACCGGGGCCTCAACGGAGGGGTTACATGCCACAA
CGCCGGTGGAGGTGGAGAAAAAGAGTGGTTCGTTAGCGTTGCCGCCCGGC
GGGGAAAAGAAACGAGAAAGCGAAGGAAAGGTGGACGATGATGGCGCGCC
CCCTCTTCGATGCATCGGAATGGTGCTGTTTTTGTTGCCCATGTGTCTCG
TCGCAGCAGCAGAAGGCGGTCGCCTCCACCGGGGCCTCAACGGAGGGGTT
ACATGCCACAACGCCGGTGGAGGTGGAGAAAAAGAGTGGTTCGTTAGCGT
TGCCGCCCGGCGGGGAAAAGAAACGAGAAAGCGAAGGAAAGGTGGACGAT
GATGGCGCGCCCCCTCCAATCGGCAACGGAGGCAAGACGGACAAGTACGT
GTGGACACAGACGCTGCAAGAGCTGAGCGTGATTGTGGCCGTGCCTAAGG
GCTCCAGGTCTCGAGACGTCGTCTGCGACATCACGAAGTCGCGTCTGCGC
GTTGGGATGAGGGGTCAGCCGCTCCTGATCGATCAATCGGCAACGGAGGC
AAGACGGACAAGTACGTGTGGACACAGACGCTGCAAGAGCTGAGCGTGAT
TGTGGCCGTGCCTAAGGGCTCCAGGTCTCGAGACGTCGTCTGCGACATCA
CGAAGTCGCGTCTGCGCGTTGGGATGAGGGGTCAGCCGCTCCTGATCGAT
GGGGAGATGTACAACAAGGTCAAGGTGGACGATAGTTTCTGGACGCTTGA
AGACGGGAAGGAAATCAGCATCGCGCTGCAAAAGGGGGAGATGTACAACA
AGGTCAAGGTGGACGATAGTTTCTGGACGCTTGAAGACGGGAAGGAAATC
AGCATCGCGCTGCAAAAGGAAAACCAGATGGAGTGGTGGAAATGTGTGGT
GAAGGGTGACTCAGAGATCAACACCTCCAAGGAAAACCAGATGGAGTGGT
GGAAATGTGTGGTGAAGGGTGACTCAGAGATCAACACCTCCAAGGTTCAG
CCCGAGAACAGCAAGTTGGGCGACCTCGATGGAGAGACGAGGAAGACAGT
GGAGAAGATGATGGTTCAGCCCGAGAACAGCAAGTTGGGCGACCTCGATG
GAGAGACGAGGAAGACAGTGGAGAAGATGATGTTTGATCAGCGCCAGAAG
GCACAGGGCCTACCGACATCGGACGAGATGGGCAAGCAGGAGATGCTCAA
GAAATTCATGGCGCAGTTTGATCAGCGCCAGAAGGCACAGGGCCTACCGA
CATCGGACGAGATGGGCAAGCAGGAGATGCTCAAGAAATTCATGGCGCAG
CACCCGGAGATGGACTTCTCACGTGCCAAGATATCGTAACACCCGGAGAT
GGACTTCTCACGTGCCAAGATATCGTAA
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