mRNA_H-elongata_contig156633.3694.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA) HSP 1 Score: 105 bits (262), Expect = 2.080e-25 Identity = 50/123 (40.65%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYR--DSRKQVGLLKKAMYGLVDT 363
++V++P+ K +G R +F K DG IE+Y+ RLVA+G+ + GI Y+E+ +P ++R+VL++ A GW+ QLDV A+L ++EEE+Y+E+P+ ++ + R +V LLKKA+YGL +
Sbjct: 24 EIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQS 146
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 107 bits (268), Expect = 1.060e-24 Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 7 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGL 354
V RP+ + ++G++ VFK K DG++EKY+ RLVAQGF +V+GI Y E+ +P SIR++L++ A WE Q+DV A+L ++EEEIY+++P ++ S V LKKA+YGL
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGL 1145
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE) HSP 1 Score: 101 bits (251), Expect = 1.790e-24 Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 4 VVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVY--------RDSRKQVGLLKKAMYGLVDTG 366
+V+RP+GKTV+G+R VF+ K+ DG +E+ + RLVA+GF ++ G HY E+ + +SIR V+++ A E QLD AYL ++EEEIY+E+P+ +D +V ++KA+YGL +G
Sbjct: 51 LVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSG 179
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 102 bits (255), Expect = 5.900e-23 Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 354
+VV+ P K +G + ++K K + DG IE+Y+ RLVAQGF +++GI Y+E SP S+R L+++ A WE Q+DV+ A+L D+EEE+Y++LPE ++ + K +V L+K++YGL
Sbjct: 583 KVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGL 701
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR) HSP 1 Score: 95.5 bits (236), Expect = 9.310e-23 Identity = 46/114 (40.35%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 16 PKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 354
P GK ++G R V+K K G +EKY+ RLVA+GF +++G + E+ +P ++R +LS+ A GWE Q+DV A+L D+EEE+Y+++P+ Y+ ++ V L+K++YGL
Sbjct: 20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGL 133
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 102 bits (253), Expect = 9.850e-23 Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 354
+VV+ P K +G + ++K K + DG IE+Y+ RLVAQGF +++GI Y+E+ SP S+R L++ A WE Q+DV+ A+L D+EEE+Y++LPE ++ + K +V L+K++YGL
Sbjct: 114 KVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGL 232
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI) HSP 1 Score: 102 bits (253), Expect = 1.110e-22 Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 366
++VE PKG+ V+G+R V+K K+D+DGR +Y+ RLVAQGF + GI + ++ +P ++IR+++S+ AL +D+ AYL ++EE+Y++ P Y D +V LL++A+YGL G
Sbjct: 726 ELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAG 847
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5) HSP 1 Score: 100 bits (248), Expect = 1.330e-22 Identity = 48/121 (39.67%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDT 363
++V+ P+GK ++G + VF K DG +E+Y+ RLVA+GF + G+ Y+E+ +P S+R++LS+ AA W QLDV A+L D+EEE+++ LP + ++ +V LKK++YGL +
Sbjct: 17 KLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQS 137
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY) HSP 1 Score: 101 bits (252), Expect = 1.500e-22 Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 7 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 366
VERP+ + V+ + VFK K DG IEKY+ RLVA+GF +V+G+ + E+ +P AS+R +L++ A L E Q+DV A+L D++EEIY+++P +R S V L KA+YGL G
Sbjct: 902 VERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAG 1021
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY) HSP 1 Score: 101 bits (252), Expect = 1.500e-22 Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 7 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 366
VERP+ + V+ + VFK K DG IEKY+ RLVA+GF +V+G+ + E+ +P AS+R +L++ A L E Q+DV A+L D++EEIY+++P +R S + L KA+YGL G
Sbjct: 638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAG 757 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156633.3694.1 >prot_H-elongata_contig156633.3694.1 ID=prot_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEEback to top mRNA from alignment at H-elongata_contig156633:897..1271+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156633.3694.1 ID=mRNA_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig156633:897..1271+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156633:897..1271+ >mRNA_H-elongata_contig156633.3694.1 ID=mRNA_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig156633:897..1271+ (Himanthalia elongata Himel1 dioecious)back to top |