mRNA_H-elongata_contig156586.3689.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156586.3689.1
Unique NamemRNA_H-elongata_contig156586.3689.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156586.3689.1 vs. uniprot
Match: A0A6H5K121_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K121_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.110e-33
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    7 VEEAHRASTAKTS-PRAALLRCAHLSEDLEKKVMRLSRAQESIIVPFTAAHVTGKEQWKFNEKVILSLGLVDAQVFLVAMHDVVKPDKEEFKVFRSQV 297
            V EA RAS +K+S PRAALLRCA L+E+LE K  RL+R QE+ IVP TAA+ T K+QWKFN+KVI SLGLVDAQVFLVAMHD +K D+EEF  FR  V
Sbjct:  246 VAEAERASASKSSSPRAALLRCAELAEELEAKAARLARVQEAAIVPVTAAYTTSKQQWKFNDKVIFSLGLVDAQVFLVAMHDAIKSDREEFNKFRKNV 343
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BLAST of mRNA_H-elongata_contig156586.3689.1 vs. uniprot
Match: A0A4D9CW14_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW14_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.160e-8
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   76 LSEDLEKKVMRLSRAQESIIVPFTAAHVTGKEQWKFNEKVILSLGLVDAQVFLVAMHDVVKPDKEEFKVFRSQV 297
            L+  +E KV  +   Q+S++VP  AA+++ KEQ KFN KVI SLG+  ++V LV+M + V+ D  E   F++Q+
Sbjct:  189 LAGKMEVKVKGMIDTQDSMLVPVVAAYLSQKEQKKFNNKVISSLGIFKSRVHLVSMAEAVRGDATEETKFKNQI 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156586.3689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K121_9PHAE1.110e-3368.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CW14_9STRA3.160e-841.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156586contigH-elongata_contig156586:147..1115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog2880.D8LG67
EggNOG OGs2CGEV@1,2S9K2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001770.1
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.1480768-CDS-H-elongata_contig156586:146..3381622929924.1480768-CDS-H-elongata_contig156586:146..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156586 147..338 +
1691679210.1998744-CDS-H-elongata_contig156586:146..3381691679210.1998744-CDS-H-elongata_contig156586:146..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156586 147..338 +
1622929924.1587656-CDS-H-elongata_contig156586:1004..11151622929924.1587656-CDS-H-elongata_contig156586:1004..1115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156586 1005..1115 +
1691679210.214669-CDS-H-elongata_contig156586:1004..11151691679210.214669-CDS-H-elongata_contig156586:1004..1115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156586 1005..1115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156586.3689.1prot_H-elongata_contig156586.3689.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156586 147..1115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156586.3689.1

>prot_H-elongata_contig156586.3689.1 ID=prot_H-elongata_contig156586.3689.1|Name=mRNA_H-elongata_contig156586.3689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
KLVEEAHRASTAKTSPRAALLRCAHLSEDLEKKVMRLSRAQESIIVPFTA
AHVTGKEQWKFNEKVILSLGLVDAQVFLVAMHDVVKPDKEEFKVFRSQVL
*
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mRNA from alignment at H-elongata_contig156586:147..1115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156586.3689.1 ID=mRNA_H-elongata_contig156586.3689.1|Name=mRNA_H-elongata_contig156586.3689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at H-elongata_contig156586:147..1115+ (Himanthalia elongata Himel1 dioecious)
AAGCTCGTGGAGGAGGCGCATAGGGCGTCGACGGCGAAGACATCACCCCG
GGCGGCCCTGCTCCGGTGCGCCCACCTCTCGGAAGACCTAGAGAAAAAGG
TCATGCGGCTGTCAAGGGCTCAAGAGAGTATCATCGTACCGTTCACCGCG
GCCCACGTGACCGGGAAAGAGCAGTGGAAGTTCAACGAGAAGGTGTGCGC
GGGAGAGACGGGGAAAGGGGAGGATAGAGGGGGAATCAGATCCCGAAGGC
CCTTTCCGCTTTCGCGGAAGGACTGCCGGCGATCGCGATTCGAATCTCGC
TTAAAGAACGCTGTAATAGATCTATACCGCTACCAATACAAATAACTAGA
TAACATAAAAATAACACTATATCTGTATAGCTACGGTGTAAAGGGTTTCA
GGTACGTACTTCAAACGGGTACGGTAAGCCTTGTGGGAACGCCCCCTTGG
TCCCCTCTCTATTTCGTTGTAAATGCCTACGACACCGCGGGATAACCAAA
GCTCCCCCTTGCTTCGTCATCTCGAGGGTGCGTCATCAATAGTAATGCTC
TAACACCCTCTAACACCCGAGGCATGTAAAACTTGGGTACCCCCCTCTCC
TCCATCCATCCCAGCGGATTTAATTGTCTTCACGGTGATTTCAGCTCGGG
CCGACGGTTTGGGTACGGGGCTAGGGTCCACCGTCGGTCGGTCGTTCTGG
CGGCGCGATGCAGTTGATGCGCGCGCTAGGCGTCATGGCTGTCCACATAT
TATATATTATGTATCGTAGGGGAGAACCACGAGAAACATAATATCCATCC
ACTTTTGATTTGTGTCTGTCTGTGTGTTTTATGTGTAAATACGTGGATTC
GTATGCAGGTCATCTTGAGCCTGGGTCTGGTGGACGCGCAGGTATTCTTG
GTGGCGATGCACGATGTCGTAAAGCCGGACAAGGAGGAATTCAAAGTCTT
CCGCTCACAGGTGCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156586:147..1115+

>mRNA_H-elongata_contig156586.3689.1 ID=mRNA_H-elongata_contig156586.3689.1|Name=mRNA_H-elongata_contig156586.3689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig156586:147..1115+ (Himanthalia elongata Himel1 dioecious)
AAGCTCGTGGAGGAGGCGCATAGGGCGTCGACGGCGAAGACATCACCCCG
GGCGGCCCTGCTCCGGTGCGCCCACCTCTCGGAAGACCTAGAGAAAAAGG
TCATGCGGCTGTCAAGGGCTCAAGAGAGTATCATCGTACCGTTCACCGCG
GCCCACGTGACCGGGAAAGAGCAGTGGAAGTTCAACGAGAAGAAGCTCGT
GGAGGAGGCGCATAGGGCGTCGACGGCGAAGACATCACCCCGGGCGGCCC
TGCTCCGGTGCGCCCACCTCTCGGAAGACCTAGAGAAAAAGGTCATGCGG
CTGTCAAGGGCTCAAGAGAGTATCATCGTACCGTTCACCGCGGCCCACGT
GACCGGGAAAGAGCAGTGGAAGTTCAACGAGAAGGTCATCTTGAGCCTGG
GTCTGGTGGACGCGCAGGTATTCTTGGTGGCGATGCACGATGTCGTAAAG
CCGGACAAGGAGGAATTCAAAGTCTTCCGCTCACAGGTGCTTTGAGTCAT
CTTGAGCCTGGGTCTGGTGGACGCGCAGGTATTCTTGGTGGCGATGCACG
ATGTCGTAAAGCCGGACAAGGAGGAATTCAAAGTCTTCCGCTCACAGGTG
CTTTGA
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