prot_H-elongata_contig156501.3684.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156501.3684.1
Unique Nameprot_H-elongata_contig156501.3684.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_PHATC (Photosystem II reaction center protein L n=87 Tax=cellular organisms TaxID=131567 RepID=PSBL_PHATC)

HSP 1 Score: 77.0 bits (188), Expect = 4.770e-18
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            MTGPNPNKQ VELNRTSLYWGLLLIFVLAVLFSSYFFN
Sbjct:    1 MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_CYAM1 (Photosystem II reaction center protein L n=7 Tax=Eukaryota TaxID=2759 RepID=PSBL_CYAM1)

HSP 1 Score: 76.3 bits (186), Expect = 9.630e-18
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            M+GPNPNKQPVELNRTSLYWGLL IFVLA+LFSSYFFN
Sbjct:    1 MSGPNPNKQPVELNRTSLYWGLLCIFVLAILFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_GRATL (Photosystem II reaction center protein L n=137 Tax=Florideophyceae TaxID=2806 RepID=PSBL_GRATL)

HSP 1 Score: 75.9 bits (185), Expect = 1.370e-17
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            M+GPNPNK+PVELNRTSL+WGLLLIFVLAVLFSSYFFN
Sbjct:    1 MSGPNPNKEPVELNRTSLFWGLLLIFVLAVLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: A0A516ZAF7_9STRA (Photosystem II reaction center protein L n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAF7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.950e-17
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            M+GPNPN+QPVEL+RTSLYWGLLLIFVLAVLFSSYFFN
Sbjct:    1 MSGPNPNRQPVELSRTSLYWGLLLIFVLAVLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_EMIHU (Photosystem II reaction center protein L n=5 Tax=cellular organisms TaxID=131567 RepID=PSBL_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 2.770e-17
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            M+ PNPNKQPVELNRTSLYWGLLL+FVLAVLFSSYFFN
Sbjct:    1 MSAPNPNKQPVELNRTSLYWGLLLMFVLAVLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: C6KIX9_9STRA (Photosystem II reaction center protein L n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=C6KIX9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.770e-17
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            MTGPNPN+QPVELNRTSLY+GLLLIFVLAVLFSSYFFN
Sbjct:    1 MTGPNPNRQPVELNRTSLYFGLLLIFVLAVLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: D4NY75_GALSU (Photosystem II reaction center protein L n=15 Tax=Eukaryota TaxID=2759 RepID=D4NY75_GALSU)

HSP 1 Score: 74.3 bits (181), Expect = 5.590e-17
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            MTG NPNKQPVELNRTSL+WGLLLIFVLA+LFSSYFFN
Sbjct:    1 MTGSNPNKQPVELNRTSLFWGLLLIFVLALLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: A0A8K1YUB7_9FLOR (Photosystem II protein L n=2 Tax=Kumanoa TaxID=644269 RepID=A0A8K1YUB7_9FLOR)

HSP 1 Score: 74.3 bits (181), Expect = 1.170e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            M+GPNPNK PVELNRTSL+WGLLLIFVLAVLFSSYFFN
Sbjct:   33 MSGPNPNKVPVELNRTSLFWGLLLIFVLAVLFSSYFFN 70          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_CYACA (Photosystem II reaction center protein L n=67 Tax=Eukaryota TaxID=2759 RepID=PSBL_CYACA)

HSP 1 Score: 73.2 bits (178), Expect = 1.610e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            M+G NPNKQPVELNRTSL+WGLLLIFVLAVLFSSYFFN
Sbjct:    1 MSGINPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN 38          
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_PHYPA (Photosystem II reaction center protein L n=237 Tax=Embryophyta TaxID=3193 RepID=PSBL_PHYPA)

HSP 1 Score: 72.8 bits (177), Expect = 2.280e-16
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
            MT PNPNKQ VELNRTSLYWGLLLIFVLAVLFS+YFFN
Sbjct:    1 MTQPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBL_PHATC4.770e-1897.37Photosystem II reaction center protein L n=87 Tax=... [more]
PSBL_CYAM19.630e-1892.11Photosystem II reaction center protein L n=7 Tax=E... [more]
PSBL_GRATL1.370e-1792.11Photosystem II reaction center protein L n=137 Tax... [more]
A0A516ZAF7_9STRA1.950e-1792.11Photosystem II reaction center protein L n=2 Tax=D... [more]
PSBL_EMIHU2.770e-1792.11Photosystem II reaction center protein L n=5 Tax=c... [more]
C6KIX9_9STRA2.770e-1794.74Photosystem II reaction center protein L n=1 Tax=A... [more]
D4NY75_GALSU5.590e-1792.11Photosystem II reaction center protein L n=15 Tax=... [more]
A0A8K1YUB7_9FLOR1.170e-1692.11Photosystem II protein L n=2 Tax=Kumanoa TaxID=644... [more]
PSBL_CYACA1.610e-1692.11Photosystem II reaction center protein L n=67 Tax=... [more]
PSBL_PHYPA2.280e-1692.11Photosystem II reaction center protein L n=237 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003372Photosystem II PsbLPFAMPF02419PsbLcoord: 4..38
e-value: 2.7E-26
score: 91.2
IPR003372Photosystem II PsbLHAMAPMF_01317PSII_PsbLcoord: 1..38
score: 15.254
NoneNo IPR availablePANTHERPTHR33391:SF11coord: 1..37
NoneNo IPR availablePANTHERPTHR33391FAMILY NOT NAMEDcoord: 1..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..17
NoneNo IPR availablePRODOMPD005113coord: 2..38
e-value: 9.0E-14
score: 180.0
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR037266Photosystem II PsbL superfamilySUPERFAMILY161017Photosystem II reaction center protein L, PsbLcoord: 3..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156501contigH-elongata_contig156501:1330..1446 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156501.3684.1mRNA_H-elongata_contig156501.3684.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156501 1330..1446 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156501.3684.1 ID=prot_H-elongata_contig156501.3684.1|Name=mRNA_H-elongata_contig156501.3684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003372PSII_PsbL
IPR037266PSII_PsbL_sf