mRNA_H-elongata_contig156308.3671.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156308.3671.1
Unique NamemRNA_H-elongata_contig156308.3671.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A6H5JES4_9PHAE (Misat_Tub_SegII domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JES4_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.630e-72
Identity = 125/194 (64.43%), Postives = 139/194 (71.65%), Query Frame = 1 
Query:    1 RVTGQVTRLSAHPFGLDDSVRTWPDFLKSRLHPRALQELPFRDESSEFGLYTAGRGEWG---GGTLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHECKNRPRVCYAFLRREGAEVAPGCRVPGTTRVRVGRGSGSRPGPHGGAAAASRSAVNLALGLHGLTEVFSSVYLLDEDAC 573
            R TG VTRL+ HPFGLDD+V +WPDFLKSRLHPRALQELPFRDESS+FGLY +G           LGE DREQ SDALR+QLEECDA QGTQT  D+EGGW GL  ALA E+Q EC+NRPRVCYA LR++ A   PGCR PG          G R     G AA  RSAVNLALGLHGL E FS  ++LDE+AC
Sbjct:  176 RATGDVTRLTKHPFGLDDTVTSWPDFLKSRLHPRALQELPFRDESSDFGLYASGXXXXXXSRSSALGESDREQFSDALRQQLEECDAAQGTQTLVDLEGGWSGLGSALALELQEECRNRPRVCYALLRQKDAPAGPGCRAPGAL--------GGRAAVKAGGAA--RSAVNLALGLHGLNEAFSLSFVLDEEAC 359
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A835Z5A4_9STRA (Tubulin/FtsZ, GTPase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.150e-25
Identity = 71/184 (38.59%), Postives = 92/184 (50.00%), Query Frame = 1 
Query:   22 RLSAHPFGLDDSVRTWPDFLKSRLHPRALQELPFRDESS-EFGLYTAGRGEWGGGTLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHECKNRPRVCYAFLRREGAEVAPGCRVPGTTRVRVGRGSGSRPGPHGGAAAASRSAVNLALGLHGLTEVFSSVYLLDEDA 570
            ++  HPFGLDD V  W D+LKS L    LQELPFRD  +  F  + +G G  G   +    RE ++DALRR+LEECDA QG Q  AD  GGW GL+ ++  + + EC++ P VCY     +  +                         HG        AVN AL LH L+EV + V  L E A
Sbjct:  178 KVRRHPFGLDDDVACWGDYLKSNLRRGTLQELPFRDAGAGAFETFASG-GSGGDSAVDAAARELYADALRRRLEECDAVQGVQCVADARGGWAGLAASMLADARDECRSAPVVCYPVASADDTDXXXXXXXXXXXXXXX-----XXXXAHG--------AVNRALALHALSEVCTLVAPLSEAA 347
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A1B6LBE0_9HEMI (Uncharacterized protein n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LBE0_9HEMI)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-10
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:   40 FGLDDSVRTWPDFLKSRLHPRAL---QELPFRDESSEFGLYTAGRGEWGGGTLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHECKNRPRVC 360
            + LDDSVR+W DFL+  LHPR +   QE    D S  F  +  G+  W          E+ +D +R  LEE D  QG Q   D   G+ GL CA  + ++ E  ++  +C
Sbjct:  143 YHLDDSVRSWSDFLRPHLHPRNINLVQEYQHEDASLPFDTFPQGQAIWSSSRF----NEEFTDRVRLYLEETDNLQGFQVLMDSYDGFSGLGCAALQHLRDEYPSKTCLC 248
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A8J6C1D5_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C1D5_DIALT)

HSP 1 Score: 68.9 bits (167), Expect = 2.860e-10
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:   25 LSAHPFGLDDSVRTWPDFLKSRLHPRALQELP-FRDESSEFGLYTAGRGEWGGGTLGEG---DREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHE 336
            +SA+ F    SVR W D+L+  +HPR++ EL  +    S    +  GR   GG   G G   D +   DA+RRQLE CD PQG    ADM+  +GGL+ A    I  E
Sbjct:  181 VSANDFSFRQSVRHWSDYLQLDVHPRSVHELKDYTHGYSRLNRFADGRALLGGALGGGGAAADGDALLDAVRRQLEPCDLPQGLLVLADMDSAYGGLAHATLLAIGDE 288
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A7S1UI84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI84_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.870e-9
Identity = 38/103 (36.89%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:   58 VRTWPDFLKSRLHPRALQELPFRDESSEFGLYTAGRGEWGGG---TLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHECKNRPRV 357
            V  W DF  +    R LQ +P  D  + FG++ AG    G      +    R+   DA+R QLE CDA QG    +D  GGWGGL   +AEE + +  + P V
Sbjct:  303 VHYWTDFFLADTRERHLQRVPIWDLGAHFGVFNAGFANLGAQQEEVVDVDTRDAWEDAVRWQLEACDATQGIVLLSDAWGGWGGLGAWVAEEAKDQLGSSPLV 405
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: B3MRV4_DROAN (Uncharacterized protein n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3MRV4_DROAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.460e-8
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   40 FGLDDSVRTWPDFLKSRLHPRALQELPFRDES---SEFGLYTAGRGEWGGGTLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHE 336
            + L ++VR+WPDFL +R HPR+L  LP    S        Y+AG   W   +      E+ +D +R  +EECD  QG     D++ G+GGL+    E +  E
Sbjct:  154 YQLAETVRSWPDFLYARYHPRSLNVLPGLARSPVHQTISTYSAGAALWEEASF----NEELTDRIRLYIEECDGLQGFHLLFDIDDGFGGLAGKCLEHLNDE 251
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A4D8ZD73_SALSN (Uncharacterized protein n=5 Tax=Salvia TaxID=21880 RepID=A0A4D8ZD73_SALSN)

HSP 1 Score: 63.5 bits (153), Expect = 1.990e-8
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:   46 LDDSVRTWPDFLKSRLHPRALQEL-PFRDESSEFGLYTAGRGEWGGGTLGEGDREQHSDALRRQLEECDAPQGTQTFA-----------DMEGGWGGLSCALAEEIQHECKNRPRVCYA 366
            L++ ++ W DF K   HP++L EL     +S +F  Y  GR  + GG       EQ +D LR  LEECD PQG QTFA           D  GG+ G++  + E I  +  N P + Y+
Sbjct:  154 LENDIQYWTDFSKVHYHPQSLYELCGLWTDSKDFNNYGIGREAFSGGL----HAEQVNDRLRFFLEECDHPQGYQTFATLTFKGIQFIVDDSGGFSGVAGEVLEIIADDYPNIPVLLYS 268
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BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Match: A0A4C1XJK9_EUMVA (Protein misato n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XJK9_EUMVA)

HSP 1 Score: 54.3 bits (129), Expect = 2.830e-5
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:   46 LDDSVRTWPDFLKSRLHPRALQELPFRDESSE--FGLYTAGRGEWGGGTLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGGLSCALAEEIQHE 336
            LD+SV+TW D+L  R HPR +  +   D  ++  F +Y  G+  W     GE      +D +R+  EECD+ QG Q   D    + GL+ +  E +  E
Sbjct:  125 LDNSVKTWTDYLYPRFHPRTVNIVKEYDHGNDSTFDVYMTGQNIWKS-EYGEN----FADNIRKYTEECDSMQGFQVNFDCTDAFSGLALSCTEYLCDE 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156308.3671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JES4_9PHAE1.630e-7264.43Misat_Tub_SegII domain-containing protein n=2 Tax=... [more]
A0A835Z5A4_9STRA2.150e-2538.59Tubulin/FtsZ, GTPase domain-containing protein n=1... [more]
A0A1B6LBE0_9HEMI1.100e-1035.45Uncharacterized protein n=1 Tax=Graphocephala atro... [more]
A0A8J6C1D5_DIALT2.860e-1039.81Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S1UI84_9STRA3.870e-936.89Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
B3MRV4_DROAN1.460e-835.29Uncharacterized protein n=3 Tax=ananassae subgroup... [more]
A0A4D8ZD73_SALSN1.990e-836.13Uncharacterized protein n=5 Tax=Salvia TaxID=21880... [more]
A0A4C1XJK9_EUMVA2.830e-533.33Protein misato n=1 Tax=Eumeta variegata TaxID=1515... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156308contigH-elongata_contig156308:25..1359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue5.5e-61
Seed eggNOG ortholog2880.D7FL30
Preferred nameMSTO1
KEGG rclassRC00443
KEGG koko:K01679,ko:K12396,ko:K17408
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04142,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04142,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
GOsGO:0000002,GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005856,GO:0006276,GO:0006996,GO:0007005,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048311,GO:0051179,GO:0051225,GO:0051276,GO:0051640,GO:0051641,GO:0051646,GO:0070925,GO:0071840,GO:0090307,GO:0098588,GO:0098805,GO:0098813,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.mitochondrion organization
EggNOG OGsKOG2530@1,KOG2530@2759
EC4.2.1.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size573
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156308.3671.1prot_H-elongata_contig156308.3671.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156308 25..1359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.708101-CDS-H-elongata_contig156308:24..921622929921.708101-CDS-H-elongata_contig156308:24..92Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156308 25..92 +
1691679209.4323843-CDS-H-elongata_contig156308:24..921691679209.4323843-CDS-H-elongata_contig156308:24..92Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156308 25..92 +
1622929921.7329345-CDS-H-elongata_contig156308:401..6001622929921.7329345-CDS-H-elongata_contig156308:401..600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156308 402..600 +
1691679209.4473872-CDS-H-elongata_contig156308:401..6001691679209.4473872-CDS-H-elongata_contig156308:401..600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156308 402..600 +
1622929921.7480443-CDS-H-elongata_contig156308:1053..13591622929921.7480443-CDS-H-elongata_contig156308:1053..1359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156308 1054..1359 +
1691679209.4572716-CDS-H-elongata_contig156308:1053..13591691679209.4572716-CDS-H-elongata_contig156308:1053..1359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156308 1054..1359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156308.3671.1

>prot_H-elongata_contig156308.3671.1 ID=prot_H-elongata_contig156308.3671.1|Name=mRNA_H-elongata_contig156308.3671.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
RVTGQVTRLSAHPFGLDDSVRTWPDFLKSRLHPRALQELPFRDESSEFGL
YTAGRGEWGGGTLGEGDREQHSDALRRQLEECDAPQGTQTFADMEGGWGG
LSCALAEEIQHECKNRPRVCYAFLRREGAEVAPGCRVPGTTRVRVGRGSG
SRPGPHGGAAAASRSAVNLALGLHGLTEVFSSVYLLDEDAC
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mRNA from alignment at H-elongata_contig156308:25..1359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156308.3671.1 ID=mRNA_H-elongata_contig156308.3671.1|Name=mRNA_H-elongata_contig156308.3671.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-elongata_contig156308:25..1359+ (Himanthalia elongata Himel1 dioecious)
AGGGTGACGGGACAAGTTACCCGACTATCCGCGCACCCCTTCGGCCTCGA
TGACTCGGTCAGAACTTGGTGAGTGTGAGTGGATGATGAGCGTCGCAATG
ATAACTCTTATGTACCAATTGCAGACAGGCAAGCAAGTGGAGGTGGTGGC
CGCGAACGGGGACAAAGCATAAACAGGAAGACAATTCTCTCTCGGGCATT
TTTTTTCTCTCTCTCTTTTTTCTGACCACCGAAAGGGACCGACCGACCGC
CGCCTAGAAAAGAGAGAAACAAAGCCTTAGCCGACAGACCGACCCGGAAT
CCTCTACCTTGTAGGAAAAAGATTGTTTGCGTTTTTGTTGTTGTTGCACG
TGTGCTGTTTTTGCTATTTTGCTACAGGCCAGACTTTCTCAAGTCAAGGT
TGCATCCGAGAGCCCTGCAAGAGCTCCCTTTCCGGGACGAGTCGAGCGAG
TTCGGCCTGTACACTGCCGGAAGGGGCGAATGGGGAGGGGGTACTTTGGG
CGAGGGAGATCGCGAGCAGCACTCGGACGCGTTGAGAAGGCAACTGGAGG
AGTGTGACGCTCCTCAGGGCACACAGGTGCATCTAACGTTAAATCAGAGA
AATTAAAATACTCAACTAAGGGGAGGGAAGGGAAGAAAAATATGCGGTTA
CTGAAAGGGCGAAAGCTCTGCAGCACCTGGTCGTCGATTGTGTATCGGCA
GAAAAAAGGCCGGCTTGTTTCTCCTTGTGACGGGTGTCTTTGAAGAGGGG
GTCGAGCCAGATCTCCTCACGGAGGTTGCAGTTGTCGTGTTATCAGCCCG
CAAGATACCCCAAGGCACCCGTTGTGTGACGAACCTAGAGCCCCTTCCGC
AATAAGCAGCACCGTTTATGATGAGAGAGCTGTCGAGACGAGCGATTAAC
TGCAAGGTGGCCTCTTACCACCCAGGTGTATTTTGTAGCCTCTTCCCGGT
TGATCTCTCTCATTAAAAACACCCTTTTACTCTTGTGTTTGAACGCCCTT
TCGACTAATAATTTCGGTATTTTGTTTAGACCTTCGCCGACATGGAGGGG
GGCTGGGGAGGCCTCTCCTGTGCCTTGGCGGAAGAAATCCAGCATGAGTG
TAAAAATCGACCCAGGGTTTGCTACGCGTTCTTGAGGCGGGAAGGCGCTG
AGGTCGCTCCCGGTTGCCGCGTACCCGGTACCACCAGGGTCAGAGTCGGC
AGGGGATCGGGATCGCGACCCGGACCACATGGTGGGGCGGCCGCTGCCTC
TCGGTCAGCCGTGAATCTTGCCTTGGGTTTACATGGGCTCACGGAGGTGT
TTTCGTCTGTTTATTTGCTCGACGAGGACGCTTGT
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Coding sequence (CDS) from alignment at H-elongata_contig156308:25..1359+

>mRNA_H-elongata_contig156308.3671.1 ID=mRNA_H-elongata_contig156308.3671.1|Name=mRNA_H-elongata_contig156308.3671.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig156308:25..1359+ (Himanthalia elongata Himel1 dioecious)
AGGGTGACGGGACAAGTTACCCGACTATCCGCGCACCCCTTCGGCCTCGA
TGACTCGGTCAGAACTTGAGGGTGACGGGACAAGTTACCCGACTATCCGC
GCACCCCTTCGGCCTCGATGACTCGGTCAGAACTTGGCCAGACTTTCTCA
AGTCAAGGTTGCATCCGAGAGCCCTGCAAGAGCTCCCTTTCCGGGACGAG
TCGAGCGAGTTCGGCCTGTACACTGCCGGAAGGGGCGAATGGGGAGGGGG
TACTTTGGGCGAGGGAGATCGCGAGCAGCACTCGGACGCGTTGAGAAGGC
AACTGGAGGAGTGTGACGCTCCTCAGGGCACACAGGCCAGACTTTCTCAA
GTCAAGGTTGCATCCGAGAGCCCTGCAAGAGCTCCCTTTCCGGGACGAGT
CGAGCGAGTTCGGCCTGTACACTGCCGGAAGGGGCGAATGGGGAGGGGGT
ACTTTGGGCGAGGGAGATCGCGAGCAGCACTCGGACGCGTTGAGAAGGCA
ACTGGAGGAGTGTGACGCTCCTCAGGGCACACAGACCTTCGCCGACATGG
AGGGGGGCTGGGGAGGCCTCTCCTGTGCCTTGGCGGAAGAAATCCAGCAT
GAGTGTAAAAATCGACCCAGGGTTTGCTACGCGTTCTTGAGGCGGGAAGG
CGCTGAGGTCGCTCCCGGTTGCCGCGTACCCGGTACCACCAGGGTCAGAG
TCGGCAGGGGATCGGGATCGCGACCCGGACCACATGGTGGGGCGGCCGCT
GCCTCTCGGTCAGCCGTGAATCTTGCCTTGGGTTTACATGGGCTCACGGA
GGTGTTTTCGTCTGTTTATTTGCTCGACGAGGACGCTTGTACCTTCGCCG
ACATGGAGGGGGGCTGGGGAGGCCTCTCCTGTGCCTTGGCGGAAGAAATC
CAGCATGAGTGTAAAAATCGACCCAGGGTTTGCTACGCGTTCTTGAGGCG
GGAAGGCGCTGAGGTCGCTCCCGGTTGCCGCGTACCCGGTACCACCAGGG
TCAGAGTCGGCAGGGGATCGGGATCGCGACCCGGACCACATGGTGGGGCG
GCCGCTGCCTCTCGGTCAGCCGTGAATCTTGCCTTGGGTTTACATGGGCT
CACGGAGGTGTTTTCGTCTGTTTATTTGCTCGACGAGGACGCTTGT
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