mRNA_H-elongata_contig156.3657.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156.3657.1
Unique NamemRNA_H-elongata_contig156.3657.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5KT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT09_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.560e-56
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 1
Query:   70 MSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            MSRTTAETSFHHFCEK S+GLW TWVKLP G++L+KV EIYRKCGYPGA GSTDCTHF W GC FSE+  HTGKEGYTS+VVE TCDHSGRII A K
Sbjct:    1 MSRTTAETSFHHFCEKFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWSGCPFSEKNTHTGKEGYTSLVVECTCDHSGRIIAATK 97          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.060e-50
Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 QVLGVLKVLAGENSFLDVAGFSRMSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            QVLGVL+ L   N F DVA FS MSRTTAE SFH FC   + GLW TW++LPEGEDL +V   YR  GYPGAVGS DCTH  W  C+FSE T H GKEGYT+VV EA CDH+GRI+ + K
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTK 124          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5KJD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD5_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 9.250e-50
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 QVLGVLKVLAGENSFLDVAGFSRMSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGK 291
            +VLG LKVLA    F DVA FS MSRTTAETSFHHFCE  S+GLW TWVKLP G++L+KV EIYRKCGYPGA GSTDCTHF WPGC FSE+  HTGK
Sbjct:   58 KVLGTLKVLASGCCFQDVASFSLMSRTTAETSFHHFCENFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWPGCPFSEENTHTGK 154          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 8.100e-47
Identity = 76/120 (63.33%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 QVLGVLKVLAGENSFLDVAGFSRMSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            +VLGVL+VL   N F DVA FS MSRTTAE SFH FC   + GLW TW++LPEGE L +V   YR  GYPGAVGS DCTH  W  C+FSE T H GKEGYT+VV EA CDH+GRI+ + K
Sbjct:  210 KVLGVLQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTK 329          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5JJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.800e-44
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   70 MSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            MS  TAE SFHHFCEK S  LW TWVKLP G++L++V  ++RK GYPGA+GSTDCTHF WPG   SE  ++TGKEGY +VVVEATCDH+GRII A K
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPIGDELKEVERVFRKSGYPGAIGSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEATCDHTGRIIAATK 97          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5KW69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW69_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.990e-44
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   70 MSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            MS  TAE SFHHFCEK S  LW TWVKLP G++L++V  ++RK GYPGA+GSTDCTHF WPG   SE  ++TGKEGY +VVVEATCDH+GRII A K
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEATCDHTGRIIAATK 97          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5K1K5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K5_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.360e-43
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   70 MSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            MS  TAE SFHHFCEK S  LW TWVKLP G++L++V  ++RK GYPGA+GSTDCTHF WPG   SE  ++TGKEGY +VVVEATCDH+G II A K
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEATCDHTGHIIAATK 97          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.110e-43
Identity = 74/120 (61.67%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 QVLGVLKVLAGENSFLDVAGFSRMSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            +VLGVL+VL   N F DVA  S MSR TAE SFH FC+  S GLW  WV LPEGE L+KVA  Y   G PGAV S DCTH +WP C FSE   H GKEGYT++V EA+CDHSGRI+ + K
Sbjct:  112 KVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTK 231          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5L2S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S9_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.590e-42
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 QVLGVLKVLAGENSFLDVAGFSRMSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVV 312
            Q    L+VLA    F DVA FS  SRTTAETSFHHFCEK S+GLW TWVKL  G+ L+KV EIYRK GYPGA GSTDCTHF WPGC FSE+  HT KE    V+
Sbjct:   17 QGCDALEVLASGCCFQDVASFSLTSRTTAETSFHHFCEKFSEGLWDTWVKLLRGDSLKKVEEIYRKYGYPGATGSTDCTHFRWPGCPFSEKNTHTCKEDLPGVI 120          
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.910e-42
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   70 MSRTTAETSFHHFCEKLSKGLWGTWVKLPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGYTSVVVEATCDHSGRIIVAIK 360
            MS  TAE SFHHFCEK S  LW TWVKLP G++L++V  ++RK GYPGA+ STDCTHF WPG   SE  ++TGKEGY +VVVEATCDH+GRII A K
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAISSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEATCDHTGRIIAATK 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156.3657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT09_9PHAE2.560e-5680.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE1.060e-5064.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJD5_9PHAE9.250e-5075.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE8.100e-4763.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM8_9PHAE2.800e-4468.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW69_9PHAE4.990e-4468.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K5_9PHAE1.360e-4367.01Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.110e-4361.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2S9_9PHAE1.590e-4266.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE1.910e-4267.01Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156contigH-elongata_contig156:4301..4663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog5297.GMQ_04368T0
EggNOG free text desc.Plant transposon protein
EggNOG OGs28IUF@1,2QR5Z@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.7045624-CDS-H-elongata_contig156:4300..46631622929919.7045624-CDS-H-elongata_contig156:4300..4663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156 4301..4663 +
1691679208.597572-CDS-H-elongata_contig156:4300..46631691679208.597572-CDS-H-elongata_contig156:4300..4663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156 4301..4663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156.3657.1prot_H-elongata_contig156.3657.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156 4301..4663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156.3657.1

>prot_H-elongata_contig156.3657.1 ID=prot_H-elongata_contig156.3657.1|Name=mRNA_H-elongata_contig156.3657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
QVLGVLKVLAGENSFLDVAGFSRMSRTTAETSFHHFCEKLSKGLWGTWVK
LPEGEDLEKVAEIYRKCGYPGAVGSTDCTHFAWPGCSFSEQTLHTGKEGY
TSVVVEATCDHSGRIIVAIK*
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mRNA from alignment at H-elongata_contig156:4301..4663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156.3657.1 ID=mRNA_H-elongata_contig156.3657.1|Name=mRNA_H-elongata_contig156.3657.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig156:4301..4663+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGGGGGTCTTGAAGGTGTTGGCCGGAGAAAACTCGTTCCTTGA TGTTGCTGGGTTCTCTCGGATGAGCCGTACGACTGCGGAGACATCCTTTC ACCATTTTTGCGAGAAATTGTCCAAGGGTCTGTGGGGCACGTGGGTTAAA CTTCCAGAGGGCGAGGACTTGGAGAAGGTGGCGGAAATCTACAGGAAGTG TGGTTACCCGGGGGCGGTGGGCTCAACGGACTGCACCCACTTTGCCTGGC CGGGCTGCTCGTTTTCAGAGCAGACTCTCCACACCGGCAAGGAGGGCTAT ACGTCGGTCGTGGTAGAAGCGACATGTGACCACTCTGGCCGCATTATCGT GGCCATAAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig156:4301..4663+

>mRNA_H-elongata_contig156.3657.1 ID=mRNA_H-elongata_contig156.3657.1|Name=mRNA_H-elongata_contig156.3657.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig156:4301..4663+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGGGGGTCTTGAAGGTGTTGGCCGGAGAAAACTCGTTCCTTGA
TGTTGCTGGGTTCTCTCGGATGAGCCGTACGACTGCGGAGACATCCTTTC
ACCATTTTTGCGAGAAATTGTCCAAGGGTCTGTGGGGCACGTGGGTTAAA
CTTCCAGAGGGCGAGGACTTGGAGAAGGTGGCGGAAATCTACAGGAAGTG
TGGTTACCCGGGGGCGGTGGGCTCAACGGACTGCACCCACTTTGCCTGGC
CGGGCTGCTCGTTTTCAGAGCAGACTCTCCACACCGGCAAGGAGGGCTAT
ACGTCGGTCGTGGTAGAAGCGACATGTGACCACTCTGGCCGCATTATCGT
GGCCATAAAGTAACAGGTGCTGGGGGTCTTGAAGGTGTTGGCCGGAGAAA
ACTCGTTCCTTGATGTTGCTGGGTTCTCTCGGATGAGCCGTACGACTGCG
GAGACATCCTTTCACCATTTTTGCGAGAAATTGTCCAAGGGTCTGTGGGG
CACGTGGGTTAAACTTCCAGAGGGCGAGGACTTGGAGAAGGTGGCGGAAA
TCTACAGGAAGTGTGGTTACCCGGGGGCGGTGGGCTCAACGGACTGCACC
CACTTTGCCTGGCCGGGCTGCTCGTTTTCAGAGCAGACTCTCCACACCGG
CAAGGAGGGCTATACGTCGGTCGTGGTAGAAGCGACATGTGACCACTCTG
GCCGCATTATCGTGGCCATAAAGTAA
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