mRNA_H-elongata_contig155856.3652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155856.3652.1
Unique NamemRNA_H-elongata_contig155856.3652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155856.3652.1 vs. uniprot
Match: A0A6H5JTX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.970e-34
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 SRCWNISSEGGDVAAVTAMLWRWYRDWSIPPETPLFLFGASSGGTMATSMGSKGGFQLCEKRSTYVQVSGVVSQV 225
            S CW  +SE GDV+ V AMLWRWYRDWSIPP TPLFLFGASSGG MAT M SKGGFQLCEKR+TYVQVSGV+SQV
Sbjct:  210 SGCWKYNSEDGDVSLVRAMLWRWYRDWSIPPNTPLFLFGASSGGNMATMMASKGGFQLCEKRTTYVQVSGVMSQV 284
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BLAST of mRNA_H-elongata_contig155856.3652.1 vs. uniprot
Match: D7G5R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 5.600e-34
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    7 CWNISSEGGDVAAVTAMLWRWYRDWSIPPETPLFLFGASSGGTMATSMGSKGGFQLCEKRSTYVQVSGVVSQVQCTNYTIPP 252
            CW  +SE GDV  V AMLWRWYRDWSIPP TPLFLFGASSGG MAT M SKGGFQLCEKR+TYVQVSGV+SQV   ++ +PP
Sbjct:  151 CWQHNSEDGDVNLVRAMLWRWYRDWSIPPNTPLFLFGASSGGNMATMMASKGGFQLCEKRTTYVQVSGVISQV---SWGVPP 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155856.3652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTX7_9PHAE4.970e-3481.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R7_ECTSI5.600e-3475.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155856contigH-elongata_contig155856:170..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.2187724-CDS-H-elongata_contig155856:169..3441622929919.2187724-CDS-H-elongata_contig155856:169..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155856 170..344 -
1691679208.3523576-CDS-H-elongata_contig155856:169..3441691679208.3523576-CDS-H-elongata_contig155856:169..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155856 170..344 -
1622929919.235401-CDS-H-elongata_contig155856:1124..12041622929919.235401-CDS-H-elongata_contig155856:1124..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155856 1125..1204 -
1691679208.3623421-CDS-H-elongata_contig155856:1124..12041691679208.3623421-CDS-H-elongata_contig155856:1124..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155856 1125..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155856.3652.1prot_H-elongata_contig155856.3652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155856 170..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155856.3652.1

>prot_H-elongata_contig155856.3652.1 ID=prot_H-elongata_contig155856.3652.1|Name=mRNA_H-elongata_contig155856.3652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
SRCWNISSEGGDVAAVTAMLWRWYRDWSIPPETPLFLFGASSGGTMATSM
GSKGGFQLCEKRSTYVQVSGVVSQVQCTNYTIPP*
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mRNA from alignment at H-elongata_contig155856:170..1204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155856.3652.1 ID=mRNA_H-elongata_contig155856.3652.1|Name=mRNA_H-elongata_contig155856.3652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig155856:170..1204- (Himanthalia elongata Himel1 dioecious)
AGCAGGTGCTGGAACATCAGCAGCGAAGGCGGAGATGTGGCCGCAGTGAC
AGCAATGCTATGGAGGTGGTACAGAGACTGGTGAGGGCAGCTGTCAGCAT
CAGGGGGGAGCGTCTCTTACCCCAGCTGTGGTTCTTGTTTTGCGTTGCCG
TCCCTAATGTTACGATTTGATGATATGTATCAGAAGGCGTAGGAGCGCGG
GGGGGGCATCTGGGGCATAGCTTTTGAGATACAGGCCTCGTGGGCTCTGC
TTCTTTTGACCCTTATATTTTGACGTACTCTACTCTACTATACTATAATG
TACTATAATATACTGTACTATACTGTACCAGACCCCACAGCTCAGGAGAT
AGCAACAAAGCGCGTGTCGCGAAACTGACACGAACGATACTACACCACCT
CGATACTACGATGGCTGCCCGTTGATCCCTTGGAGAGTTGGCCGGTGACG
ATCGCCAAGGGTTGGCCTTGGCCTTGGTATGCAGACATCAATTCGATAGT
GGTAAACCAAAGCGAAGAGGTCGGCCGGCAGGACGGTCCAACCGATTTTC
AACTGTGTTCCCCCTTGGCCCCCGATATCCGAATATCCTGATATCCCGAT
ATATGTAGATAATACCAGATACAGTACGGTATACATGTACATTAGTAGAG
CATAGTGAGAAATATATAGTGATAGATAACGGAAGAAGCCTCAGAGCCCT
TACTGCCTTACTGCCTTCAGGCCGCCTCCGCCTTCAAAAGCGCGCAATAC
CAGGTCCAGGTCCAGGTCATCACCTCTGCTATAGCGTTTTTAGTAAGAAA
AAAATCCAGAAGCCCCCAAAAGAAATCCAAATTGAAATAGTTTGATCGAT
CACCGCGCAGGTCGATCCCACCGGAAACACCCCTGTTTTTGTTTGGAGCG
AGCTCTGGAGGGACCATGGCCACCTCCATGGGAAGCAAGGGAGGTTTCCA
GCTCTGTGAAAAGAGGTCCACATATGTTCAAGTCTCGGGGGTGGTCTCCC
AGGTACAATGTACTAATTACACTATACCCCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig155856:170..1204-

>mRNA_H-elongata_contig155856.3652.1 ID=mRNA_H-elongata_contig155856.3652.1|Name=mRNA_H-elongata_contig155856.3652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig155856:170..1204- (Himanthalia elongata Himel1 dioecious)
AGCAGGTGCTGGAACATCAGCAGCGAAGGCGGAGATGTGGCCGCAGTGAC
AGCAATGCTATGGAGGTGGTACAGAGACTGAGCAGGTGCTGGAACATCAG
CAGCGAAGGCGGAGATGTGGCCGCAGTGACAGCAATGCTATGGAGGTGGT
ACAGAGACTGGTCGATCCCACCGGAAACACCCCTGTTTTTGTTTGGAGCG
AGCTCTGGAGGGACCATGGCCACCTCCATGGGAAGCAAGGGAGGTTTCCA
GCTCTGTGAAAAGAGGTCCACATATGTTCAAGTCTCGGGGGTGGTCTCCC
AGGTACAATGTACTAATTACACTATACCCCCCTAAGTCGATCCCACCGGA
AACACCCCTGTTTTTGTTTGGAGCGAGCTCTGGAGGGACCATGGCCACCT
CCATGGGAAGCAAGGGAGGTTTCCAGCTCTGTGAAAAGAGGTCCACATAT
GTTCAAGTCTCGGGGGTGGTCTCCCAGGTACAATGTACTAATTACACTAT
ACCCCCCTAA
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