mRNA_H-elongata_contig155332.3623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155332.3623.1
Unique NamemRNA_H-elongata_contig155332.3623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: D8LHB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.410e-18
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAMTRDLK 213
            F QGA+PFL+TYAVALN IPAVR++LNKRENA IE RN LR +W    R G   VV RKL+AA+ MT D+K
Sbjct:  441 FVQGALPFLLTYAVALNVIPAVRFVLNKRENAKIEGRNFLRRKWAEAGRSGGA-VVSRKLKAAKTMTTDMK 510          
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A6H5L6N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.170e-18
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   10 GAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAMTRDLK 213
            GA+PFL+TYAVALN IPAVR++LNKRENA IE RN LR +W    R G D V+ RKL+AA+ MT D+K
Sbjct:  210 GALPFLLTYAVALNVIPAVRFVLNKRENAKIEGRNFLRRKWAEAGRSG-DAVISRKLKAAKTMTTDMK 276          
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A7R9YG27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG27_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.720e-7
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRV--VERKLRAARA 195
            F+   +PFL+ YAVALNAIP +R+  N+R+NA I+KRN  R +  A  R     V  + +K+ AA+A
Sbjct:  488 FAANLLPFLIPYAVALNAIPIIRYFKNQRDNAGIQKRNGARQRMRALLRTATSPVSRLSKKIAAAKA 554          
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A0G4GCT4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GCT4_9ALVE)

HSP 1 Score: 55.8 bits (133), Expect = 2.350e-7
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    4 SQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAMTRDL 210
            +Q   P L +YA+ LNAIP VRW LNK +NA I  RN+ R +W A  + G+   V  KL  AR   + L
Sbjct:  441 AQRLYPALASYALVLNAIPFVRWRLNKSKNAEIRSRNDKRQRWSAYLKSGSA-YVRNKLGQARRFAQRL 508          
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A388KS96_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KS96_CHABU)

HSP 1 Score: 52.8 bits (125), Expect = 2.900e-6
Identity = 29/64 (45.31%), Postives = 35/64 (54.69%), Query Frame = 1
Query:    1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAAR 192
            F    +PFL  YA +  AIPA+RWLL K+ NA I+KRN  R  W     G     + RKL  AR
Sbjct:  664 FVSQTLPFLQAYAASFFAIPAIRWLLLKKRNAEIDKRNNTRLGWAVHV-GRPTAPLRRKLLNAR 726          
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: A0A5C7HNF3_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HNF3_9ROSI)

HSP 1 Score: 51.6 bits (122), Expect = 7.290e-6
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAM 198
            F     P L  YA +  AIP VRW LN ++NA IEKRN+ R Q+ ARA    D  + RKL +AR M
Sbjct:  400 FVSYVYPLLQIYAGSFFAIPLVRWFLNLKKNADIEKRNQAREQF-ARALKSPDLPLRRKLLSARDM 464          
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Match: UPI000B8D18F7 (LOW QUALITY PROTEIN: uncharacterized protein At5g03900, chloroplastic n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D18F7)

HSP 1 Score: 49.7 bits (117), Expect = 3.460e-5
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 FSQGAMPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRVVERKLRAARAM 198
            F     P L  YA +  AIP +RW +N++ NA IEKRN+ R Q+ ARA    D  + RKL  AR M
Sbjct:  321 FVAEIFPLLQIYAGSFFAIPLIRWFINRKRNADIEKRNQAREQF-ARALELPDLSLRRKLLCARDM 385          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155332.3623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHB2_ECTSI2.410e-1864.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6N5_9PHAE4.170e-1864.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YG27_9STRA1.720e-744.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4GCT4_9ALVE2.350e-744.93Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A388KS96_CHABU2.900e-645.31Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A5C7HNF3_9ROSI7.290e-648.48Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
UPI000B8D18F73.460e-545.45LOW QUALITY PROTEIN: uncharacterized protein At5g0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155332contigH-elongata_contig155332:92..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog2880.D8LHB2
KEGG koko:K22072
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0316@1,KOG1119@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categorysignal peptide
Exons1
Model size216
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.869062-CDS-H-elongata_contig155332:91..2921622929915.869062-CDS-H-elongata_contig155332:91..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155332 92..292 -
1691679207.1855147-CDS-H-elongata_contig155332:91..2921691679207.1855147-CDS-H-elongata_contig155332:91..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155332 92..292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.884571-UTR-H-elongata_contig155332:292..3071622929915.884571-UTR-H-elongata_contig155332:292..307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155332 293..307 -
1691679207.1968207-UTR-H-elongata_contig155332:292..3071691679207.1968207-UTR-H-elongata_contig155332:292..307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155332 293..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155332.3623.1prot_H-elongata_contig155332.3623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155332 92..292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155332.3623.1

>prot_H-elongata_contig155332.3623.1 ID=prot_H-elongata_contig155332.3623.1|Name=mRNA_H-elongata_contig155332.3623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MPFLVTYAVALNAIPAVRWLLNKRENAAIEKRNELRWQWGARARGGADRV
VERKLRAARAMTRDLK*
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mRNA from alignment at H-elongata_contig155332:92..307-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155332.3623.1 ID=mRNA_H-elongata_contig155332.3623.1|Name=mRNA_H-elongata_contig155332.3623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig155332:92..307- (Himanthalia elongata Himel1 dioecious)
TTTTCGCAGGGGGCGATGCCCTTCCTGGTGACCTACGCTGTCGCCCTGAA CGCGATTCCGGCCGTGAGGTGGCTGCTGAACAAGCGCGAGAACGCCGCGA TAGAGAAGAGAAACGAGCTCCGCTGGCAGTGGGGCGCTAGGGCCAGGGGT GGCGCCGACCGGGTGGTCGAGAGGAAGCTGCGGGCGGCCAGGGCCATGAC AAGGGATCTGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig155332:92..307-

>mRNA_H-elongata_contig155332.3623.1 ID=mRNA_H-elongata_contig155332.3623.1|Name=mRNA_H-elongata_contig155332.3623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig155332:92..307- (Himanthalia elongata Himel1 dioecious)
ATGCCCTTCCTGGTGACCTACGCTGTCGCCCTGAACGCGATTCCGGCCGT
GAGGTGGCTGCTGAACAAGCGCGAGAACGCCGCGATAGAGAAGAGAAACG
AGCTCCGCTGGCAGTGGGGCGCTAGGGCCAGGGGTGGCGCCGACCGGGTG
GTCGAGAGGAAGCTGCGGGCGGCCAGGGCCATGACAAGGGATCTGAAGTG
AATGCCCTTCCTGGTGACCTACGCTGTCGCCCTGAACGCGATTCCGGCCG
TGAGGTGGCTGCTGAACAAGCGCGAGAACGCCGCGATAGAGAAGAGAAAC
GAGCTCCGCTGGCAGTGGGGCGCTAGGGCCAGGGGTGGCGCCGACCGGGT
GGTCGAGAGGAAGCTGCGGGCGGCCAGGGCCATGACAAGGGATCTGAAGT
GA
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