mRNA_H-elongata_contig155004.3609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155004.3609.1
Unique NamemRNA_H-elongata_contig155004.3609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155004.3609.1 vs. uniprot
Match: D7FUL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.100e-22
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 RIGKYVAANFVKGPCRPLGSTVVRDDFIHPSKMQQTNEAPGESSTMVSAAMGDIRTKNREGVSPDLLFGHTRDSKHADKLRQVR 252
            RIGK +A    K P   LGSTV R+DF+HPS M       G+ + M+SA+  DI+ KNREGVS DLLFGH RDS HAD LRQ R
Sbjct:   28 RIGKAIAKRLAKAPRPALGSTVEREDFVHPSTMTNNTVVSGDDTKMMSAS--DIKDKNREGVSFDLLFGHVRDSHHADTLRQDR 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155004.3609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUL0_ECTSI5.100e-2257.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155004contigH-elongata_contig155004:805..1417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7FUL0
EggNOG OGs2E8UQ@1,2SF9R@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_002840.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929914.5735645-CDS-H-elongata_contig155004:804..9601622929914.5735645-CDS-H-elongata_contig155004:804..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155004 805..960 +
1691679206.5918314-CDS-H-elongata_contig155004:804..9601691679206.5918314-CDS-H-elongata_contig155004:804..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155004 805..960 +
1622929914.590073-CDS-H-elongata_contig155004:1321..14171622929914.590073-CDS-H-elongata_contig155004:1321..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155004 1322..1417 +
1691679206.603409-CDS-H-elongata_contig155004:1321..14171691679206.603409-CDS-H-elongata_contig155004:1321..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155004 1322..1417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155004.3609.1prot_H-elongata_contig155004.3609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155004 805..1417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155004.3609.1

>prot_H-elongata_contig155004.3609.1 ID=prot_H-elongata_contig155004.3609.1|Name=mRNA_H-elongata_contig155004.3609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
RIGKYVAANFVKGPCRPLGSTVVRDDFIHPSKMQQTNEAPGESSTMVSAA
MGDIRTKNREGVSPDLLFGHTRDSKHADKLRQVR
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mRNA from alignment at H-elongata_contig155004:805..1417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155004.3609.1 ID=mRNA_H-elongata_contig155004.3609.1|Name=mRNA_H-elongata_contig155004.3609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=613bp|location=Sequence derived from alignment at H-elongata_contig155004:805..1417+ (Himanthalia elongata Himel1 dioecious)
AGAATCGGCAAATATGTCGCGGCGAACTTCGTGAAAGGCCCATGCCGCCC
CCTTGGATCGACGGTGGTGAGAGACGACTTTATCCACCCTTCGAAAATGC
AACAAACCAACGAAGCTCCCGGGGAAAGCTCGACGATGGTGTCCGCAGCG
ATGGGGGTGGGTGAGCGATGAGAAAGAGATACAAACTCAACAGTTACGAC
CAATCGCGCTGCTCTCCGACCTCTTTCTTTCTCAAACAACAATGAAAACG
TGACATACCAGTTTTCAAGATCTGATAGTAATTTGCGTGATTGTTTTTCT
CTCCCCCTGCTTGAGGAATTACTTCTTGAGGGTTGACGGCTATTATGATA
TAGAAGCATAATCGCACCCGGAGCGATTGAGCATCATTTTGTGATGGCTC
GCTGGCGCCCTGGACGGAAATCGGCGTTGATCACTATGACTATTAATATC
AATAATCCCTAAATCCCATGATAGATAACATATTGAAGTTTATTGCTAAT
TTTGCAATGCCTCGCAGGATATAAGGACCAAGAACCGCGAGGGCGTATCC
CCCGATCTTCTCTTCGGTCACACCCGGGACAGCAAGCACGCCGACAAACT
ACGACAGGTTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig155004:805..1417+

>mRNA_H-elongata_contig155004.3609.1 ID=mRNA_H-elongata_contig155004.3609.1|Name=mRNA_H-elongata_contig155004.3609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig155004:805..1417+ (Himanthalia elongata Himel1 dioecious)
AGAATCGGCAAATATGTCGCGGCGAACTTCGTGAAAGGCCCATGCCGCCC
CCTTGGATCGACGGTGGTGAGAGACGACTTTATCCACCCTTCGAAAATGC
AACAAACCAACGAAGCTCCCGGGGAAAGCTCGACGATGGTGTCCGCAGCG
ATGGGGAGAATCGGCAAATATGTCGCGGCGAACTTCGTGAAAGGCCCATG
CCGCCCCCTTGGATCGACGGTGGTGAGAGACGACTTTATCCACCCTTCGA
AAATGCAACAAACCAACGAAGCTCCCGGGGAAAGCTCGACGATGGTGTCC
GCAGCGATGGGGGATATAAGGACCAAGAACCGCGAGGGCGTATCCCCCGA
TCTTCTCTTCGGTCACACCCGGGACAGCAAGCACGCCGACAAACTACGAC
AGGTTCGCGATATAAGGACCAAGAACCGCGAGGGCGTATCCCCCGATCTT
CTCTTCGGTCACACCCGGGACAGCAAGCACGCCGACAAACTACGACAGGT
TCGC
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