mRNA_H-elongata_contig154712.3595.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154712.3595.1
Unique NamemRNA_H-elongata_contig154712.3595.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154712.3595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154712contigH-elongata_contig154712:1008..1360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929913.2988787-CDS-H-elongata_contig154712:1008..11681622929913.2988787-CDS-H-elongata_contig154712:1008..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154712 1009..1168 -
1691679206.0331504-CDS-H-elongata_contig154712:1008..11681691679206.0331504-CDS-H-elongata_contig154712:1008..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154712 1009..1168 -
1622929913.3199108-CDS-H-elongata_contig154712:1277..13601622929913.3199108-CDS-H-elongata_contig154712:1277..1360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154712 1278..1360 -
1691679206.0404747-CDS-H-elongata_contig154712:1277..13601691679206.0404747-CDS-H-elongata_contig154712:1277..1360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154712 1278..1360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154712.3595.1prot_H-elongata_contig154712.3595.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154712 1009..1360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154712.3595.1

>prot_H-elongata_contig154712.3595.1 ID=prot_H-elongata_contig154712.3595.1|Name=mRNA_H-elongata_contig154712.3595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
GQGHGGGARRGRGSRRGRHDGKGQNNRHNSGLRSPQRNSSSRKNSISGGH
LSTNCSSNYSSSRDHLDILADGDHRLFVSVA
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mRNA from alignment at H-elongata_contig154712:1008..1360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154712.3595.1 ID=mRNA_H-elongata_contig154712.3595.1|Name=mRNA_H-elongata_contig154712.3595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=353bp|location=Sequence derived from alignment at H-elongata_contig154712:1008..1360- (Himanthalia elongata Himel1 dioecious)
GGCCAGGGGCATGGCGGCGGGGCTCGACGGGGCCGTGGCAGCCGTCGCGG
TAGACACGACGGCAAAGGTCAGAATAATCGTCAGCAACAGTGGGCTTCAC
AGCCCCCAGCGCAGCAGCAGCAACAGTGGGCTTCGCACCCCCCAGCGCAG
CAGCAGCCAAAGGGGGCTTCGCACCCCCCAGCGCAGCAGCAGCAACAGTG
GGCTTCGCAGCCCCCAGCGCAACAGCAGCAGCCGCAAAAACAGCATCAGC
GGCGGTCACCTCAGCACCAACTGCAGCAGCAACTACAGCAGCAGCAGAGA
CCACCTGGACATTCTGGCGGATGGGGACCATCGCTTATTTGTTTCCGTTG
CGG
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Coding sequence (CDS) from alignment at H-elongata_contig154712:1008..1360-

>mRNA_H-elongata_contig154712.3595.1 ID=mRNA_H-elongata_contig154712.3595.1|Name=mRNA_H-elongata_contig154712.3595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig154712:1008..1360- (Himanthalia elongata Himel1 dioecious)
GGCCAGGGGCATGGCGGCGGGGCTCGACGGGGCCGTGGCAGCCGTCGCGG
TAGACACGACGGCAAAGGTCAGAATAATCGTCAGGCCAGGGGCATGGCGG
CGGGGCTCGACGGGGCCGTGGCAGCCGTCGCGGTAGACACGACGGCAAAG
GTCAGAATAATCGTCACAACAGTGGGCTTCGCAGCCCCCAGCGCAACAGC
AGCAGCCGCAAAAACAGCATCAGCGGCGGTCACCTCAGCACCAACTGCAG
CAGCAACTACAGCAGCAGCAGAGACCACCTGGACATTCTGGCGGATGGGG
ACCATCGCTTATTTGTTTCCGTTGCGCAACAGTGGGCTTCGCAGCCCCCA
GCGCAACAGCAGCAGCCGCAAAAACAGCATCAGCGGCGGTCACCTCAGCA
CCAACTGCAGCAGCAACTACAGCAGCAGCAGAGACCACCTGGACATTCTG
GCGGATGGGGACCATCGCTTATTTGTTTCCGTTGCG
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