mRNA_H-elongata_contig154052.3564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig154052.3564.1
Unique NamemRNA_H-elongata_contig154052.3564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A6H5KVY2_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY2_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 7.410e-58
Identity = 94/132 (71.21%), Postives = 108/132 (81.82%), Query Frame = 1
Query:   49 DHEAQDGIAPFDTDVVAGDDSPGCPARRLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAAR 444
            D   ++GIA FDTD++AGD   GC   RLSTFQASRLLVLM+HARTCPG HANP+HAEVC+STKFLMLH+RDC G   H  +G+PCEH WCRPCKSLLSHL+RCP P+TCRICTP DLP  LR LR+LN A+
Sbjct:  763 DDREREGIAAFDTDIIAGDSQAGCKEGRLSTFQASRLLVLMSHARTCPGRHANPKHAEVCQSTKFLMLHMRDCTG---HTASGDPCEHRWCRPCKSLLSHLIRCPDPNTCRICTPLDLPGPLRQLRDLNVAQ 891          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: D7FUA8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA8_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 6.180e-57
Identity = 99/147 (67.35%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   10 YGSDSCSETDDD--DDHEAQDGIAPFDTDVVAGDDSPGCPARRLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAAR 444
            YGS+SCS++DDD  DD   ++GIA FDTD++AGD   GC   RLSTFQASRLLVLM+HARTCPGHHANP+HAEVCRSTKFL            +G   +PCEH WCRPCKSLLSHLVRCP P+TCRICTP DLP  LR LR+LN A+
Sbjct:  533 YGSESCSDSDDDVTDDGREREGIAAFDTDIIAGDSQAGCKEGRLSTFQASRLLVLMSHARTCPGHHANPKHAEVCRSTKFLXXXXXXXXXXXXNG---DPCEHRWCRPCKSLLSHLVRCPDPNTCRICTPLDLPGPLRQLRDLNVAQ 676          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A7S2C9V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9V7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.380e-37
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  130 RLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELN 435
            +++  QAS+LLVL+ HARTCPGHH + +H+EVC+S K+LMLHIRDC G+   G     C   WC+PCK+LL+HLVRC  P +C IC+P DLP  LR LR+LN
Sbjct:   22 KMTHRQASKLLVLITHARTCPGHHMSHRHSEVCKSVKYLMLHIRDCCGKTSDG---TECSFPWCKPCKALLAHLVRCNKPDSCDICSPYDLPPALRKLRQLN 120          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A7S1TU47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU47_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.440e-36
Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   82 DTDVVAGDDSPGCPARRLSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDSATIVAA 468
            D D+    +S       +S  ++S+LL+L+ HARTCPG H + +HAEVC+S K+LMLHIRDC+GR+  G+   PC   WCRPCK+LLSHLV+C  P+TC IC P +LP  L+ L+ LN  R+  T  AA
Sbjct:  105 DNDISTDTESDMNDEFNMSPEKSSKLLILICHARTCPGKHRSRRHAEVCKSIKYLMLHIRDCSGRLPDGQ---PCPFEWCRPCKNLLSHLVKCFDPNTCAICNPWNLPRSLQELKTLNQLREQVTASAA 230          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A7R9YGR4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGR4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.280e-32
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDSAT 456
            LS  ++S+LL+L+ HARTCPG H + +HAEVC+S K+LMLHIRDC+GR+  G++   C   WCRPCK LLSHLV+C  P+TC IC P +LP  +  L  LN  R+  T
Sbjct:  362 LSPDKSSKLLILICHARTCPGKHRSKRHAEVCKSIKYLMLHIRDCSGRLPDGQS---CPFEWCRPCKKLLSHLVKCFEPNTCAICNPFNLPRSMEQLMTLNRLREQVT 466          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.070e-31
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDSATIVAAK 471
            L + QA++LLVLM HAR CPG+H + + AEVCRS KFLMLH+RDC+G+    R G+PC   WC PC SLL HL++CP  + C++C P+ LP  L+ LR LN  R S+T+  A+
Sbjct:  564 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKT---RNGDPCPMPWCEPCTSLLHHLIQCPESTGCKVCDPEHLPPPLQQLRALN--RSSSTLATAQ 671          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: W7U3G5_9STRA (TAZ-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.540e-25
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  136 STFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQ 396
            S  QAS++L LM+HARTCPGHH +  H  VC STK+LMLH+RDC+G+   G     C   WCRPCK LL HLVRC     C IC PQ
Sbjct:  550 SPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEA---CGFSWCRPCKHLLGHLVRCYESEQCSICRPQ 633          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A6U3TJG2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TJG2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.270e-24
Identity = 58/126 (46.03%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDS---------ATIVAAKKMEL 483
            LS  QA RLLVL+ HA TCPG H  P+H  VC STK+LMLH+RDC G + +G   + C   WCR  K LL HLV C     C IC P+ LP  L  L  LN  R           A + AAK+ ++
Sbjct:  783 LSDDQARRLLVLIEHASTCPGRHQCPKHRNVCHSTKYLMLHVRDCTGLLSNG---DVCPFPWCRKVKHLLYHLVSCEKGKECSICCPEKLPSNLVALTGLNQHRREKFRERTKALAAVAAAKRQQM 905          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.360e-24
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1
Query:  133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCR 381
            L + QA++LLVLM HAR CPG+H + + AEVCRS KFLMLH+RDC+G+    R G+PC   WC PC SLL HL++CP  + C+
Sbjct:  439 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKT---RNGDPCPMPWCEPCMSLLHHLIQCPESTGCK 518          
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Match: A0A448ZEC8_9STRA (TAZ-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEC8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.350e-22
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  133 LSTFQASRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGNPCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAAR 444
            LS   AS+LL+LM HA TCP  H   +H +VCRS K++MLH+RDC G      T + C   WCR  K LL HLV C  P  C IC+P++LP  L+ L  LN  R
Sbjct:  949 LSDEHASKLLILMGHAATCPCQHKLEKHRDVCRSVKYMMLHVRDCPGTTS---TFDVCPFPWCRKVKHLLYHLVSCKEPDQCAICSPKELPKGLKGLVGLNGHR 1049          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig154052.3564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KVY2_9PHAE7.410e-5871.21TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FUA8_ECTSI6.180e-5767.35TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2C9V7_9STRA2.380e-3757.84Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1TU47_9STRA1.440e-3650.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YGR4_9STRA1.280e-3254.63Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5KT72_9PHAE2.070e-3153.10TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
W7U3G5_9STRA4.540e-2557.47TAZ-type domain-containing protein n=3 Tax=Monodop... [more]
A0A6U3TJG2_9STRA1.270e-2446.03Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
D8LKM8_ECTSI4.360e-2456.63TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A448ZEC8_9STRA1.350e-2249.04TAZ-type domain-containing protein n=1 Tax=Pseudo-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig154052contigH-elongata_contig154052:303..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.7
Seed ortholog evalue5.7e-49
Seed eggNOG ortholog2880.D7FUA8
EggNOG free text desc.TAZ zinc finger
EggNOG OGs2BJCE@1,2S1FW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size522
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.483611-CDS-H-elongata_contig154052:302..5431622929910.483611-CDS-H-elongata_contig154052:302..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154052 303..543 -
1691679205.106625-CDS-H-elongata_contig154052:302..5431691679205.106625-CDS-H-elongata_contig154052:302..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154052 303..543 -
1622929910.5033715-CDS-H-elongata_contig154052:905..11861622929910.5033715-CDS-H-elongata_contig154052:905..1186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154052 906..1186 -
1691679205.1183605-CDS-H-elongata_contig154052:905..11861691679205.1183605-CDS-H-elongata_contig154052:905..1186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig154052 906..1186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig154052.3564.1prot_H-elongata_contig154052.3564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig154052 303..1186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig154052.3564.1

>prot_H-elongata_contig154052.3564.1 ID=prot_H-elongata_contig154052.3564.1|Name=mRNA_H-elongata_contig154052.3564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
SSRYGSDSCSETDDDDDHEAQDGIAPFDTDVVAGDDSPGCPARRLSTFQA
SRLLVLMAHARTCPGHHANPQHAEVCRSTKFLMLHIRDCNGRVEHGRTGN
PCEHLWCRPCKSLLSHLVRCPMPSTCRICTPQDLPDQLRLLRELNAARDS
ATIVAAKKMELCSTSASTLSSSS*
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mRNA from alignment at H-elongata_contig154052:303..1186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig154052.3564.1 ID=mRNA_H-elongata_contig154052.3564.1|Name=mRNA_H-elongata_contig154052.3564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig154052:303..1186- (Himanthalia elongata Himel1 dioecious)
TCATCAAGGTACGGGAGCGACTCCTGTTCCGAAACGGACGACGACGACGA CCACGAAGCCCAGGACGGCATCGCGCCCTTTGATACCGATGTGGTCGCCG GGGACGATTCCCCGGGCTGTCCTGCCCGGCGCCTCTCAACCTTCCAGGCC TCCCGTCTCCTTGTGCTCATGGCGCACGCGCGCACCTGCCCCGGCCACCA CGCCAACCCCCAACACGCCGAGGTCTGCCGATCGACCAAGTTTCTCATGC TTCACATCCGGGACTGCAACGGGCGAGTCGAGTCTTCGAGGGGGGGCGGG GTGTTCCAGATGTGTCTGTTACGGATGTCTGCGGGCGTGCTAGCGAGCAT TCTTCCTTCACATCCCCTTTGAAAGACTTTTCATTATCTTCTTTGTTGTT GCATTAAAGGTGTTCCCCATACAGCTGCGAGGCGTGCTAAACTTGGTTCT AGGAGTACGGTATCACCACGAGTCACTACCCAAACTTGTCTGCGCGCGTG TCAGCCCTGGCAGGAACGCAGTTAGCTCGTTAAATGCCCTCGTACATTAT GTTGTTTATACCGGCAGGCTTGAGGTGTGAAGCAATGCTGACGCTGCTTT CTTGTGTTGTCCTGTCTCGATCCTTACCGTTTTTGCCTCACAGACACGGG CGCACGGGCAATCCCTGCGAGCACCTCTGGTGCAGGCCCTGCAAGAGCCT GCTCAGCCATCTCGTGCGCTGCCCCATGCCGAGCACTTGCCGTATCTGCA CGCCGCAGGACCTTCCCGACCAGCTACGCCTTCTTCGGGAGCTCAACGCG GCGCGGGATTCGGCAACAATCGTGGCAGCCAAGAAGATGGAGCTTTGCTC CACGAGCGCGTCTACTCTGAGTTCGAGTTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig154052:303..1186-

>mRNA_H-elongata_contig154052.3564.1 ID=mRNA_H-elongata_contig154052.3564.1|Name=mRNA_H-elongata_contig154052.3564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig154052:303..1186- (Himanthalia elongata Himel1 dioecious)
TCATCAAGGTACGGGAGCGACTCCTGTTCCGAAACGGACGACGACGACGA
CCACGAAGCCCAGGACGGCATCGCGCCCTTTGATACCGATGTGGTCGCCG
GGGACGATTCCCCGGGCTGTCCTGCCCGGCGCCTCTCAACCTTCCAGGCC
TCCCGTCTCCTTGTGCTCATGGCGCACGCGCGCACCTGCCCCGGCCACCA
CGCCAACCCCCAACACGCCGAGGTCTGCCGATCGACCAAGTTTCTCATGC
TTCACATCCGGGACTGCAACGGGCGAGTCGATCATCAAGGTACGGGAGCG
ACTCCTGTTCCGAAACGGACGACGACGACGACCACGAAGCCCAGGACGGC
ATCGCGCCCTTTGATACCGATGTGGTCGCCGGGGACGATTCCCCGGGCTG
TCCTGCCCGGCGCCTCTCAACCTTCCAGGCCTCCCGTCTCCTTGTGCTCA
TGGCGCACGCGCGCACCTGCCCCGGCCACCACGCCAACCCCCAACACGCC
GAGGTCTGCCGATCGACCAAGTTTCTCATGCTTCACATCCGGGACTGCAA
CGGGCGAGTCGAACACGGGCGCACGGGCAATCCCTGCGAGCACCTCTGGT
GCAGGCCCTGCAAGAGCCTGCTCAGCCATCTCGTGCGCTGCCCCATGCCG
AGCACTTGCCGTATCTGCACGCCGCAGGACCTTCCCGACCAGCTACGCCT
TCTTCGGGAGCTCAACGCGGCGCGGGATTCGGCAACAATCGTGGCAGCCA
AGAAGATGGAGCTTTGCTCCACGAGCGCGTCTACTCTGAGTTCGAGTTCC
TGAACACGGGCGCACGGGCAATCCCTGCGAGCACCTCTGGTGCAGGCCCT
GCAAGAGCCTGCTCAGCCATCTCGTGCGCTGCCCCATGCCGAGCACTTGC
CGTATCTGCACGCCGCAGGACCTTCCCGACCAGCTACGCCTTCTTCGGGA
GCTCAACGCGGCGCGGGATTCGGCAACAATCGTGGCAGCCAAGAAGATGG
AGCTTTGCTCCACGAGCGCGTCTACTCTGAGTTCGAGTTCCTGA
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