mRNA_H-elongata_contig15399.3559.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15399.3559.1
Unique NamemRNA_H-elongata_contig15399.3559.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15399.3559.1 vs. uniprot
Match: D7G0R4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R4_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 3.660e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 CSKLPSYGVTGSTKREYCAGHALEGMVNVKKKK 99
            C K P+YGV G++ REYC  HAL GMV+V +KK
Sbjct:   50 CGKYPTYGVEGTSNREYCREHALSGMVDVHRKK 82
[Close]
BLAST of mRNA_H-elongata_contig15399.3559.1 vs. uniprot
Match: A0A6H5J7Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z7_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.870e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 CSKLPSYGVTGSTKREYCAGHALEGMVNVKKKK 99
            C K P+YGV G++ REYC  HAL GMV+V +KK
Sbjct:   50 CGKYPTYGVEGTSNREYCREHALSGMVDVHRKK 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15399.3559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R4_ECTSI3.660e-560.61EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5J7Z7_9PHAE3.870e-560.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15399contigH-elongata_contig15399:7668..7844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-23_003640.1
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.907623-CDS-H-elongata_contig15399:7667..78441622929909.907623-CDS-H-elongata_contig15399:7667..7844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15399 7668..7844 -
1691679204.8545594-CDS-H-elongata_contig15399:7667..78441691679204.8545594-CDS-H-elongata_contig15399:7667..7844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15399 7668..7844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15399.3559.1prot_H-elongata_contig15399.3559.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15399 7668..7844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15399.3559.1

>prot_H-elongata_contig15399.3559.1 ID=prot_H-elongata_contig15399.3559.1|Name=mRNA_H-elongata_contig15399.3559.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
CSKLPSYGVTGSTKREYCAGHALEGMVNVKKKKCVVDECSKLPTYGMAGS
TKREYCAEH
back to top

mRNA from alignment at H-elongata_contig15399:7668..7844-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15399.3559.1 ID=mRNA_H-elongata_contig15399.3559.1|Name=mRNA_H-elongata_contig15399.3559.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig15399:7668..7844- (Himanthalia elongata Himel1 dioecious)
TGCTCTAAGCTCCCAAGCTACGGGGTGACCGGAAGTACAAAGCGGGAGTA
CTGTGCCGGGCATGCCTTGGAGGGGATGGTCAACGTAAAGAAGAAGAAGT
GTGTAGTCGATGAATGCTCAAAGCTTCCAACCTACGGGATGGCCGGAAGT
ACAAAGCGGGAGTACTGTGCCGAGCAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15399:7668..7844-

>mRNA_H-elongata_contig15399.3559.1 ID=mRNA_H-elongata_contig15399.3559.1|Name=mRNA_H-elongata_contig15399.3559.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig15399:7668..7844- (Himanthalia elongata Himel1 dioecious)
TGCTCTAAGCTCCCAAGCTACGGGGTGACCGGAAGTACAAAGCGGGAGTA
CTGTGCCGGGCATGCCTTGGAGGGGATGGTCAACGTAAAGAAGAAGAAGT
GTGTAGTCGATGAATGCTCAAAGCTTCCAACCTACGGGATGGCCGGAAGT
ACAAAGCGGGAGTACTGTGCCGAGCATTGCTCTAAGCTCCCAAGCTACGG
GGTGACCGGAAGTACAAAGCGGGAGTACTGTGCCGGGCATGCCTTGGAGG
GGATGGTCAACGTAAAGAAGAAGAAGTGTGTAGTCGATGAATGCTCAAAG
CTTCCAACCTACGGGATGGCCGGAAGTACAAAGCGGGAGTACTGTGCCGA
GCAT
back to top