prot_H-elongata_contig15352.3531.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15352.3531.1
Unique Nameprot_H-elongata_contig15352.3531.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
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BLAST of mRNA_H-elongata_contig15352.3531.1 vs. uniprot
Match: D7FKV3_ECTSI (GOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.160e-17
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 0 
Query:    9 ELAVIVNGVQELDTLLKEIQKKQDLEERTIAGRIKAADDNHISMEQSSVIETVVLVVIGVGQLVLVRRWFQGKGTLLKHW 88
            +LA+I   +  L  + +EI+  Q+LE   +  R  AA+DN+ SM QSSV+ET+VL+++G+GQ++ VR+WF GKGTLLK W
Sbjct:  172 DLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKGTLLKQW 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15352.3531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKV3_ECTSI2.160e-1748.75GOLD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..92
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15352contigH-elongata_contig15352:4477..5256 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15352.3531.1mRNA_H-elongata_contig15352.3531.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15352 3578..6211 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15352.3531.1 ID=prot_H-elongata_contig15352.3531.1|Name=mRNA_H-elongata_contig15352.3531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MDGGDDIGELAVIVNGVQELDTLLKEIQKKQDLEERTIAGRIKAADDNHI
SMEQSSVIETVVLVVIGVGQLVLVRRWFQGKGTLLKHWRTKN*
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