mRNA_H-elongata_contig15304.3504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15304.3504.1
Unique NamemRNA_H-elongata_contig15304.3504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15304.3504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15304contigH-elongata_contig15304:4136..4613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.8016648-CDS-H-elongata_contig15304:4135..42881622929904.8016648-CDS-H-elongata_contig15304:4135..4288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 4136..4288 +
1691679202.4743216-CDS-H-elongata_contig15304:4135..42881691679202.4743216-CDS-H-elongata_contig15304:4135..4288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 4136..4288 +
1622929904.8139832-CDS-H-elongata_contig15304:4499..46131622929904.8139832-CDS-H-elongata_contig15304:4499..4613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 4500..4613 +
1691679202.483781-CDS-H-elongata_contig15304:4499..46131691679202.483781-CDS-H-elongata_contig15304:4499..4613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15304 4500..4613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15304.3504.1prot_H-elongata_contig15304.3504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15304 4136..4613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15304.3504.1

>prot_H-elongata_contig15304.3504.1 ID=prot_H-elongata_contig15304.3504.1|Name=mRNA_H-elongata_contig15304.3504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MGEELLRARQAAERAACSGENDIIEMEKTMYAKNQRNFSELKEKISRAEE
RVLVLEPLEEEVMRLRDEVDVLRPTEIKLAKMEETLSR*
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mRNA from alignment at H-elongata_contig15304:4136..4613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15304.3504.1 ID=mRNA_H-elongata_contig15304.3504.1|Name=mRNA_H-elongata_contig15304.3504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at H-elongata_contig15304:4136..4613+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAAGAGTTACTGCGAGCACGACAGGCGGCGGAGAGAGCGGCATG
CTCGGGAGAGAACGATATAATCGAGATGGAGAAGACAATGTACGCAAAGA
ACCAGCGAAATTTTTCTGAGCTGAAGGAGAAGATCTCCAGGGCTGAGGAG
AGGGTAAGAATGGCTGATGGGCTATCGTGTGGATATATTTTTTGGAGGCG
GAGACTTAACAGGGTTTGTTGCTGCATTTCGATCCTTTTCAGGCAGCGAG
ATGCGCTTTCTAGTCTGTGGTATGGGTGCAATTTGTACTGGAATGTAGAA
TATTCCTCATGCAGCTTTATTCTGGCATGGCATCAATCGGCGTCCGGTGC
GAACGTTCATCCAGGTGCTGGTGTTGGAACCCTTGGAAGAAGAGGTGATG
AGGCTTCGCGACGAGGTGGATGTTCTCAGACCCACGGAGATCAAGCTTGC
CAAGATGGAAGAAACCCTCTCTAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig15304:4136..4613+

>mRNA_H-elongata_contig15304.3504.1 ID=mRNA_H-elongata_contig15304.3504.1|Name=mRNA_H-elongata_contig15304.3504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig15304:4136..4613+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAAGAGTTACTGCGAGCACGACAGGCGGCGGAGAGAGCGGCATG
CTCGGGAGAGAACGATATAATCGAGATGGAGAAGACAATGTACGCAAAGA
ACCAGCGAAATTTTTCTGAGCTGAAGGAGAAGATCTCCAGGGCTGAGGAG
AGGATGGGCGAAGAGTTACTGCGAGCACGACAGGCGGCGGAGAGAGCGGC
ATGCTCGGGAGAGAACGATATAATCGAGATGGAGAAGACAATGTACGCAA
AGAACCAGCGAAATTTTTCTGAGCTGAAGGAGAAGATCTCCAGGGCTGAG
GAGAGGGTGCTGGTGTTGGAACCCTTGGAAGAAGAGGTGATGAGGCTTCG
CGACGAGGTGGATGTTCTCAGACCCACGGAGATCAAGCTTGCCAAGATGG
AAGAAACCCTCTCTAGGTGAGTGCTGGTGTTGGAACCCTTGGAAGAAGAG
GTGATGAGGCTTCGCGACGAGGTGGATGTTCTCAGACCCACGGAGATCAA
GCTTGCCAAGATGGAAGAAACCCTCTCTAGGTGA
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