mRNA_H-elongata_contig15218.3447.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A836CB04_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB04_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 9.570e-11 Identity = 51/137 (37.23%), Postives = 69/137 (50.36%), Query Frame = 2
Query: 2 FSGPMEAGQDKNASETTVLKSRARTAELRRLLAPYLLQRLKD-----------------AVTVMDQTAV-------------TKTEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
+S P+E GQD++A+ V +S+AR EL +L P+LLQR K+ A D T TKTE+VVWVALSA QR Y +L V VL+G ++PL +I LKK+ H L+
Sbjct: 377 YSEPIERGQDRDATPLQVARSQARARELWLMLRPHLLQRSKEDLKRQGAAAXXXXXXXAAAQGTDATNAPEPASGPAMRQLPTKTEVVVWVALSAAQRCAYSDFLASGRVANVLSGD-TNPLASITYLKKVCGHTLL 512
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A6P4MHV5_GOSAR (protein CHROMATIN REMODELING 24 n=6 Tax=Gossypium TaxID=3633 RepID=A0A6P4MHV5_GOSAR) HSP 1 Score: 66.2 bits (160), Expect = 2.410e-10 Identity = 44/104 (42.31%), Postives = 54/104 (51.92%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVTK----TEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNASE ELR + PY L+RLK V D T+ K E++VW+ L+A QRR Y +L E V G SPL A+ LKKI HPL+
Sbjct: 558 GNDKNASEREKRVGSTVAKELRERIQPYFLRRLKKEVFGEDDTSTAKLSKKNEIIVWLKLTACQRRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 658
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A5B6UDJ2_9ROSI (Protein CHROMATIN REMODELING 24 n=24 Tax=Gossypium TaxID=3633 RepID=A0A5B6UDJ2_9ROSI) HSP 1 Score: 66.2 bits (160), Expect = 2.410e-10 Identity = 44/104 (42.31%), Postives = 54/104 (51.92%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVTK----TEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNASE ELR + PY L+RLK V D T+ K E++VW+ L+A QRR Y +L E V G SPL A+ LKKI HPL+
Sbjct: 619 GNDKNASEREKRVGSTVAKELRERIQPYFLRRLKKEVFGEDDTSTAKLSKKNEIIVWLKLTACQRRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 719
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A7J9GPC5_9ROSI (Helicase ATP-binding domain-containing protein n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GPC5_9ROSI) HSP 1 Score: 65.9 bits (159), Expect = 3.120e-10 Identity = 44/104 (42.31%), Postives = 54/104 (51.92%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVTK----TEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNASE ELR + PY L+RLK V D T+ K E++VW+ L+A QRR Y +L E V G SPL A+ LKKI HPL+
Sbjct: 357 GNDKNASEREKRIGSTVAKELRERIQPYFLRRLKKEVFGEDDTSTAKLSKKNEIIVWLKLTACQRRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 457
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A7J8ZK78_9ROSI (Helicase C-terminal domain-containing protein n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J8ZK78_9ROSI) HSP 1 Score: 65.9 bits (159), Expect = 3.130e-10 Identity = 44/104 (42.31%), Postives = 54/104 (51.92%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVTK----TEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNASE ELR + PY L+RLK V D T+ K E++VW+ L+A QRR Y +L E V G SPL A+ LKKI HPL+
Sbjct: 82 GNDKNASEREKRIGSTVAKELRERIQPYFLRRLKKEVFGEDDTSTAKLSKKNEIIVWLKLTACQRRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 182
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A804JZG8_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musa TaxID=4640 RepID=A0A804JZG8_MUSAM) HSP 1 Score: 65.5 bits (158), Expect = 4.450e-10 Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 2
Query: 2 FSGPMEAGQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVT-----KTEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
+ P+ G DKNAS+ ELR + PY L+RLK V D A + K+E++VW+ L+A QR+ Y +L E V + G SPL A+ LKKI HPL+
Sbjct: 429 YENPILRGNDKNASDREKHIGSTVAKELRERIKPYFLRRLKSEVFCEDDGANSVKLSKKSEIIVWLKLTACQRQLYEAFLNSELVHASMEG---SPLAALTILKKICDHPLL 537
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A7J8PCD6_GOSRA (Helicase ATP-binding domain-containing protein (Fragment) n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J8PCD6_GOSRA) HSP 1 Score: 64.3 bits (155), Expect = 1.100e-9 Identity = 43/104 (41.35%), Postives = 54/104 (51.92%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVTK----TEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G +KNASE ELR + PY L+RLK V D T+ K E++VW+ L+A QRR Y +L E V G SPL A+ LKKI HPL+
Sbjct: 473 GNEKNASEREKRIGSTVAKELRERIQPYFLRRLKKEVFGEDDTSTAKLSKKNEIIVWLKLTACQRRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 573
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A7N0TBK3_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TBK3_KALFE) HSP 1 Score: 63.2 bits (152), Expect = 2.890e-9 Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTA-----VTKTEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNASE ELR ++ PY L+RLK V + + TK E++VW+ L+A Q+R Y +L E V G SPL A+ LKKI HPL+
Sbjct: 556 GNDKNASERDKRIGSTVAKELREVIQPYFLRRLKSEVFNQNDDSNSASLSTKNEIIVWLRLTACQQRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 657
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: A0A1U8LZK0_GOSHI (protein CHROMATIN REMODELING 24-like isoform X2 n=4 Tax=Gossypium TaxID=3633 RepID=A0A1U8LZK0_GOSHI) HSP 1 Score: 62.4 bits (150), Expect = 5.320e-9 Identity = 43/104 (41.35%), Postives = 53/104 (50.96%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVMDQTAVTK----TEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNASE ELR + P L+RLK V D T+ K E++VW+ L+A QRR Y +L E V G SPL A+ LKKI HPL+
Sbjct: 557 GNDKNASEREKRIGSTVAKELRERIQPCFLRRLKKEVFGEDDTSTAKLSKKNEIIVWLKLTACQRRLYEAFLNSEIVLSAFDG---SPLAALTILKKICDHPLL 657
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Match: UPI001F5E15F5 (SNF2 domain-containing protein ENL1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5E15F5) HSP 1 Score: 59.3 bits (142), Expect = 6.450e-8 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 2
Query: 23 GQDKNASETTVLKSRARTAELRRLLAPYLLQRLKDAVTVM-----DQTAVTKTEMVVWVALSAKQRRNYVTYLGGESVKGVLAGKISSPLEAIQALKKISLHPLV 322
G DKNA+ +LR + PY L+R+K V V D+ K E++VW+ L+A QR+ Y +L + V + G SPL AI LKKI HP++
Sbjct: 465 GNDKNATNREKHVGSTVAKDLRERIKPYFLRRMKSEVFVDTGSADDKKLSKKNELIVWLKLTACQRKLYEAFLNSDMVHSSMQG---SPLAAITILKKICDHPMI 566 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15218.3447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15218.3447.1 >prot_H-elongata_contig15218.3447.1 ID=prot_H-elongata_contig15218.3447.1|Name=mRNA_H-elongata_contig15218.3447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp LLGTDGSRAGQERLRDHSLEVEGENSRAETAPRALPSAASQGCRHCHGPDback to top mRNA from alignment at H-elongata_contig15218:1228..3875- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15218.3447.1 ID=mRNA_H-elongata_contig15218.3447.1|Name=mRNA_H-elongata_contig15218.3447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2648bp|location=Sequence derived from alignment at H-elongata_contig15218:1228..3875- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15218:1228..3875- >mRNA_H-elongata_contig15218.3447.1 ID=mRNA_H-elongata_contig15218.3447.1|Name=mRNA_H-elongata_contig15218.3447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig15218:1228..3875- (Himanthalia elongata Himel1 dioecious)back to top |