mRNA_H-elongata_contig152002.3443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152002.3443.1
Unique NamemRNA_H-elongata_contig152002.3443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.360e-22
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  112 QERLAIVVPAYRGDLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDTISQVAGTCFARTRAVFAHLNQE 366
            Q+RL +VVPAY+GDL RAVSSL+RWP  CSP+TL+N DLVLYY E      E +   +SA+++IS  AG CF+RTR V+A+L QE
Sbjct:   31 QQRLGVVVPAYKGDLARAVSSLERWPAKCSPLTLENADLVLYYAE------EESSATASALESISTTAGRCFSRTRIVYANLAQE 109
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BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.860e-22
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  109 SQERLAIVVPAYRGDLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDTISQVAGTCFARTRAVFAHLNQE 366
            SQ+RL ++VPAY GDL RAVSSL+RWP  CSP+TL+N DLVLYY E      E +   +SA+D+IS  AG CF+RTR V+A+L +E
Sbjct:   27 SQQRLGVIVPAYDGDLARAVSSLERWPVKCSPLTLKNADLVLYYAE------EASSATASALDSISSTAGRCFSRTRVVYANLAEE 106
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BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Match: A0A6H5JMG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.780e-22
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:  118 RLAIVVPAYRGDLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDTISQVAGTCFARTRAVFAHLNQE 366
            +LA+VVPAY GDL+RAV+SL RWPT CSP+T+Q VDLVLYY E E    E++  V +AV+ I+  AG CFA  R V+AHL Q+
Sbjct:   56 KLAVVVPAYNGDLDRAVASLGRWPTDCSPLTVQYVDLVLYYAEGE----EDSEAVGAAVEMIAATAGRCFAEVRTVYAHLEQD 134
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BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.420e-22
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:  112 QERLAIVVPAYRGDLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDTISQVAGTCFARTRAVFAHLNQE 366
            Q+RLA+VVPAY+GDL+RAV+SL RWPT CS VT +NVDLVLYY E E    E+A  V +A   +++ AG CFA+T  V+AHL++E
Sbjct:   38 QQRLAVVVPAYKGDLDRAVASLGRWPTDCSSVTQRNVDLVLYYAEGE----EDAAPVDAATTALAESAGRCFAKTLTVYAHLSEE 118
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BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.340e-22
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:  115 ERLAIVVPAYRGDLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDTISQVAGTCFARTRAVFAHLNQE 366
            ++L +VVP Y+GDL RAVSSL+RWP  CSP+TL+N DLVLYY E      E +   +SA+D+IS  AG CFARTR VFA+L +E
Sbjct:   28 QQLGVVVPTYKGDLARAVSSLERWPAKCSPLTLENADLVLYYAE------EESSATASALDSISSTAGRCFARTRIVFANLAEE 105
[Close]
BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.850e-22
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:  112 QERLAIVVPAYRGDLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDTISQVAGTCFARTRAVFAHLNQE 366
            Q+RL +VVPAY GDL RAVSSL+RWP  CSP+TL+N DLVLYY E      E +   +SA+++IS  AG CF+RTR V+A+L +E
Sbjct:   29 QQRLGVVVPAYDGDLARAVSSLERWPAKCSPLTLENADLVLYYAE------EESSATASALESISSTAGRCFSRTRIVYANLAEE 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152002.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FI39_ECTSI1.360e-2258.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI63_ECTSI1.860e-2258.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMG7_9PHAE2.780e-2259.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSN3_9PHAE3.420e-2258.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJP6_9PHAE6.340e-2258.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI37_ECTSI8.850e-2257.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152002contigH-elongata_contig152002:386..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue8.7e-20
Seed eggNOG ortholog2880.D7FI39
EggNOG OGs2D0G2@1,2SE3H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.5876842-CDS-H-elongata_contig152002:385..7511622929899.5876842-CDS-H-elongata_contig152002:385..751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152002 386..751 +
1691679200.4085798-CDS-H-elongata_contig152002:385..7511691679200.4085798-CDS-H-elongata_contig152002:385..751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152002 386..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152002.3443.1prot_H-elongata_contig152002.3443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152002 386..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152002.3443.1

>prot_H-elongata_contig152002.3443.1 ID=prot_H-elongata_contig152002.3443.1|Name=mRNA_H-elongata_contig152002.3443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
LIQLTAGLVLLLLLAAYPKTAVGSVQQQQQLSSPSSSQERLAIVVPAYRG
DLERAVSSLDRWPTACSPVTLQNVDLVLYYGEVEEEEGENAPDVSSAVDT
ISQVAGTCFARTRAVFAHLNQE
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mRNA from alignment at H-elongata_contig152002:386..752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152002.3443.1 ID=mRNA_H-elongata_contig152002.3443.1|Name=mRNA_H-elongata_contig152002.3443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=367bp|location=Sequence derived from alignment at H-elongata_contig152002:386..752+ (Himanthalia elongata Himel1 dioecious)
CTGATCCAGTTAACGGCAGGCTTGGTTCTCCTGCTGCTGCTCGCGGCGTA
CCCGAAAACTGCTGTTGGATCGGTGCAGCAGCAGCAGCAACTATCATCGC
CTTCTTCTTCTCAAGAGCGGCTGGCGATTGTTGTTCCGGCTTACCGGGGC
GATCTCGAACGTGCCGTATCCTCACTGGATCGATGGCCCACAGCGTGCTC
ACCGGTAACGCTCCAAAACGTGGACCTCGTGCTCTACTATGGAGAGGTCG
AGGAGGAGGAAGGGGAGAACGCGCCCGATGTATCCTCGGCGGTTGATACA
ATATCTCAGGTGGCCGGCACCTGCTTCGCCAGGACGCGAGCGGTATTCGC
TCACCTGAATCAAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig152002:386..752+

>mRNA_H-elongata_contig152002.3443.1 ID=mRNA_H-elongata_contig152002.3443.1|Name=mRNA_H-elongata_contig152002.3443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig152002:386..752+ (Himanthalia elongata Himel1 dioecious)
CTGATCCAGTTAACGGCAGGCTTGGTTCTCCTGCTGCTGCTCGCGGCGTA
CCCGAAAACTGCTGTTGGATCGGTGCAGCAGCAGCAGCAACTATCATCGC
CTTCTTCTTCTCAAGAGCGGCTGGCGATTGTTGTTCCGGCTTACCGGGGC
GATCTCGAACGTGCCGTATCCTCACTGGATCGATGGCCCACAGCGTGCTC
ACCGGTAACGCTCCAAAACGTGGACCTCGTGCTCTACTATGGAGAGGTCG
AGGAGGAGGAAGGGGAGAACGCGCCCGATGTATCCTCGGCGGTTGATACA
ATATCTCAGGTGGCCGGCACCTGCTTCGCCAGGACGCGAGCGGTATTCGC
TCACCTGAATCAAGAGCTGATCCAGTTAACGGCAGGCTTGGTTCTCCTGC
TGCTGCTCGCGGCGTACCCGAAAACTGCTGTTGGATCGGTGCAGCAGCAG
CAGCAACTATCATCGCCTTCTTCTTCTCAAGAGCGGCTGGCGATTGTTGT
TCCGGCTTACCGGGGCGATCTCGAACGTGCCGTATCCTCACTGGATCGAT
GGCCCACAGCGTGCTCACCGGTAACGCTCCAAAACGTGGACCTCGTGCTC
TACTATGGAGAGGTCGAGGAGGAGGAAGGGGAGAACGCGCCCGATGTATC
CTCGGCGGTTGATACAATATCTCAGGTGGCCGGCACCTGCTTCGCCAGGA
CGCGAGCGGTATTCGCTCACCTGAATCAAGAG
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