mRNA_H-elongata_contig151548.3411.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151548.3411.1
Unique NamemRNA_H-elongata_contig151548.3411.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: D8LLL8_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 7.580e-32
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:    3 NPRKFLEMPLFVSHVGKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLTDEDESK 212
            NPRKFLE+PL+VSHVGKSMY +QLERWFDLFGR+NFKVVF DDMAVDPVGVL+DVL FL L+LT EDESK
Sbjct:  352 NPRKFLEVPLYVSHVGKSMYALQLERWFDLFGRENFKVVFTDDMAVDPVGVLEDVLHFLGLELTSEDESK 421
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: A0A6H5JZE4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.150e-20
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3 
Query:    3 NPRKFLEMPLFVSHVGKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLTDEDE 206
            NP  FLE  +F SHVGKS+Y +QLERW DLFGR+N KVVF+++MAVDP+G +  V +FL +DL DE E
Sbjct:  310 NPHAFLEHNMFFSHVGKSIYSLQLERWLDLFGRENVKVVFLEEMAVDPMGTIASVFDFLGVDLLDEKE 377
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: D7G7B1_ECTSI (Sulfotransferase, C-terminal Sulfotransferase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.420e-19
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 3 
Query:    3 NPRKFLEMPLFVSHVGKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLTDEDE 206
            NP  FLE  ++ SHVGKS+Y +QLERW DLFGR+N KV+F+++MAVDP+G +  V +FL +DL DE E
Sbjct:  270 NPHAFLEHNMYFSHVGKSIYSLQLERWLDLFGRENVKVLFLEEMAVDPMGTITSVFDFLGVDLLDEKE 337
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.330e-16
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:    3 NPRKFLEMPLFVSHVGKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLTD 197
            NPR +L   L+ +HVGKS+Y +QL RWF+ FGR+NFKVVF DD+  +P+  L++VL+F+ LD+ D
Sbjct:  503 NPRVYLGEVLYNAHVGKSVYAMQLRRWFNAFGRENFKVVFTDDLEEEPIKTLEEVLDFIGLDMVD 567
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: A0A6H5L245_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L245_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-15
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 3 
Query:    3 NPRKFLEMPLFVSHVGKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLTD 197
            NPR +L   L+ +HVGKS+Y +QL RWF+ FG +NFKVVF +D+  +P+  L++VL+F+ LD+ D
Sbjct:  106 NPRVYLGEILYNAHVGKSVYAMQLRRWFNAFGSENFKVVFTEDLEEEPIKTLEEVLDFIGLDMVD 170
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: B8HLJ3_CYAP4 (Sulfotransferase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) TaxID=395961 RepID=B8HLJ3_CYAP4)

HSP 1 Score: 52.0 bits (123), Expect = 4.660e-6
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 3 
Query:   54 SMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLT 194
            S Y   L+R+FDLFGRD  KV+   D+  DPV  LQ V EFL +D T
Sbjct:  177 SFYAEDLQRYFDLFGRDQLKVLLYQDLKRDPVATLQSVFEFLGIDPT 223
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: A0A6G8QD57_9ACTN (Sulfotransferase n=1 Tax=Rubrobacter tropicus TaxID=2653851 RepID=A0A6G8QD57_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 6.390e-6
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 3 
Query:   57 MYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELDLT 194
            +Y  QL R+FDLF RD  KV   DD   DPV VL+D  EFL++D T
Sbjct:  175 LYYDQLRRYFDLFERDQIKVYLYDDFRADPVQVLRDAFEFLDVDST 220
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: UPI00147E4255 (sulfotransferase domain-containing protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI00147E4255)

HSP 1 Score: 49.7 bits (117), Expect = 2.680e-5
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 3 
Query:   39 SHVGKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLEL 185
            S++ +  Y  QL+RWFDLF R+ F +   +D  VDP  VL+++ +FL+L
Sbjct:  152 SYLERGKYQEQLQRWFDLFPREQFLIFKSEDFFVDPQSVLKEIWQFLDL 200
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BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Match: A0A6N8G4I2_9CHRO (Sulfotransferase n=2 Tax=Gloeocapsopsis TaxID=693222 RepID=A0A6N8G4I2_9CHRO)

HSP 1 Score: 48.5 bits (114), Expect = 7.800e-5
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 3 
Query:   33 FVSHV-GKSMYPVQLERWFDLFGRDNFKVVFMDDMAVDPVGVLQDVLEFLELD 188
            F+ H   K  Y  QL R+ DLF R   K+   +D+  +PVGV++D+ EFLE+D
Sbjct:  154 FLWHYKSKGFYYKQLSRYLDLFDRSQIKICLYEDLKTNPVGVVKDLFEFLEVD 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151548.3411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LLL8_ECTSI7.580e-3284.29Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5JZE4_9PHAE4.150e-2061.76Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G7B1_ECTSI1.420e-1958.82Sulfotransferase, C-terminal Sulfotransferase, N-t... [more]
D7FHD4_ECTSI3.330e-1653.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L245_9PHAE2.300e-1550.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8HLJ3_CYAP44.660e-653.19Sulfotransferase n=1 Tax=Cyanothece sp. (strain PC... [more]
A0A6G8QD57_9ACTN6.390e-654.35Sulfotransferase n=1 Tax=Rubrobacter tropicus TaxI... [more]
UPI00147E42552.680e-542.86sulfotransferase domain-containing protein n=1 Tax... [more]
A0A6N8G4I2_9CHRO7.800e-543.40Sulfotransferase n=2 Tax=Gloeocapsopsis TaxID=6932... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151548contigH-elongata_contig151548:136..950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size213
Cds size141
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151548.3411.1prot_H-elongata_contig151548.3411.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151548 207..950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.0320926-UTR-H-elongata_contig151548:135..2061622929896.0320926-UTR-H-elongata_contig151548:135..206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151548 136..206 -
1691679199.0678625-UTR-H-elongata_contig151548:135..2061691679199.0678625-UTR-H-elongata_contig151548:135..206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151548 136..206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.0773013-CDS-H-elongata_contig151548:206..2341622929896.0773013-CDS-H-elongata_contig151548:206..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151548 207..234 -
1691679199.076661-CDS-H-elongata_contig151548:206..2341691679199.076661-CDS-H-elongata_contig151548:206..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151548 207..234 -
1622929896.0928853-CDS-H-elongata_contig151548:837..9501622929896.0928853-CDS-H-elongata_contig151548:837..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151548 838..950 -
1691679199.0841508-CDS-H-elongata_contig151548:837..9501691679199.0841508-CDS-H-elongata_contig151548:837..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151548 838..950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151548.3411.1

>prot_H-elongata_contig151548.3411.1 ID=prot_H-elongata_contig151548.3411.1|Name=mRNA_H-elongata_contig151548.3411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
ATRASSWRCPSLSPTWARACTRCSSSGGSTSSGAITSRWCLWTTWP*
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mRNA from alignment at H-elongata_contig151548:136..950-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151548.3411.1 ID=mRNA_H-elongata_contig151548.3411.1|Name=mRNA_H-elongata_contig151548.3411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=815bp|location=Sequence derived from alignment at H-elongata_contig151548:136..950- (Himanthalia elongata Himel1 dioecious)
GCAACCCGCGCAAGTTCTTGGAGATGCCCCTCTTTGTCTCCCACGTGGGC
AAGAGCATGTACCCGGTGCAGCTCGAGCGGTGGTTCGACCTCTTCGGGCG
CGATAACTTCAAGGTTTCCAGATGATTGACAGAGGGGACGGGGAAGGGGG
ATGGGGATGGGAAAAGGGGAGCTGGGGAATTATTGTTTTGTCAGAAATTA
ACTCTTGCTCTTTTCTGTACCATGAAGCTGCCTATATATATAGTGTAAGC
ACGTCGAATGACGTCATCCGTAAGGCGACGGGGGGGGGGGATATGTGGGT
TGTGTAATCGGAGTTAACGCTGGGCTGTGGGGGTTGGGGTACCGGACGTC
GTCGAGTGTACACACAGGGGACACGCGTTTCGAACTTGTGTTGAACGAAA
CGTGTTTCCTTGGGGTTTGTACCGACTGTATCTGTAGCGTCTGTGTGTCT
CGCTCCCGGCACGGGTAATGGCTGGAAGGGGGGACTGGGGGGGGTGGGGG
TAGATTCGCACCCGTACCATGACACGAATATGCGTTTCCGTCATTGGGTG
CACCGAATCGATCTATCGCGGAGCACAGTGTATCTATCCAACGATCCTTT
GTTATGAAGGGAAACGCCTCGGCGGTACACACTACAATACTATCCTCAAA
ACCGATGTGTGGAATGCCTGTTTTAAAATGTACCTGGTATATATATATAT
ATATATATTTTTTTAGGTGGTGTTTATGGACGACATGGCCGTAGACCCGG
TTGGGGTGCTGCAGGACGTCCTCGAGTTCTTGGAGCTCGATCTCACCGAC
GAGGATGAGAGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig151548:136..950-

>mRNA_H-elongata_contig151548.3411.1 ID=mRNA_H-elongata_contig151548.3411.1|Name=mRNA_H-elongata_contig151548.3411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig151548:136..950- (Himanthalia elongata Himel1 dioecious)
GCAACCCGCGCAAGTTCTTGGAGATGCCCCTCTTTGTCTCCCACGTGGGC
AAGAGCATGTACCCGGTGCAGCTCGAGCGGTGGTTCGACCTCTTCGGGCG
CGATAACTTCAAGGCAACCCGCGCAAGTTCTTGGAGATGCCCCTCTTTGT
CTCCCACGTGGGCAAGAGCATGTACCCGGTGCAGCTCGAGCGGTGGTTCG
ACCTCTTCGGGCGCGATAACTTCAAGGTGGTGTTTATGGACGACATGGCC
GTAGGTGGTGTTTATGGACGACATGGCCGTAG
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