mRNA_H-elongata_contig151394.3403.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151394.3403.1
Unique NamemRNA_H-elongata_contig151394.3403.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.480e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++      I  +V   GM VVG+PVGTE+F+ +FV++   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:  385 KGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRT 486
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BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.520e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++      I  +V   GM VVG+PVGTE+F+ +FV++   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:  385 KGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRT 486
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BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.540e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++      I  +V   GM VVG+PVGTE+F+ +FV++   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:  233 KGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRT 334
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.570e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++      I  +V   GM VVG+PVGTE+F+ +FV++   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:   18 KGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRT 119
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.160e-12
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++      I  +V   GM VVG+P GTE+F+ +FV++   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:   51 KGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRT 152
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5KDI2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.180e-11
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI LN  KS +L   G     LT ++      I  +V   GM VV +PVGTE+F+ +FV +   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:   51 KGIELNLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVAIPVGTEEFQRNFVPKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRT 152
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.130e-10
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++         +V   GM +VGVPVGTE F+  FV     G PA  +R L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:   84 KGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRT 185
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.420e-10
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    7 EGISLNRRKSALL-ANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            +GI L+  KS +L   G     LT ++         +V   GM +VGVPVGTE F+  FV     G PA  +R L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:  385 KGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRT 486
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5KHJ5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.610e-10
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  130 MRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            M +VGVPVGTE F+  FV     G PA  +R L  ++D QA +Q+LRLS VS L HLLRT
Sbjct:    1 MAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVSRLFHLLRT 60
[Close]
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Match: A0A6H5KED8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.860e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   70 LTEEQCIAGDSIRFTVVGQGMRVVGVPVGTEQFKWDFVNQAVNGEPA--VRALVPMNDAQAGFQILRLSAVSCLSHLLRT 303
            LT ++      I   V   GM VVG+PVGTE+F+ +FV++   G+PA  +  L  ++D QA +Q+LRLS V  L HLLRT
Sbjct:    4 LTNDEQQQLTKIGLPVAEGGMSVVGIPVGTEEFQRNFVSKFAGGDPADLILRLATLDDPQASYQLLRLSGVPRLFHLLRT 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151394.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JCM0_9PHAE3.480e-1242.16Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE3.520e-1242.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE3.540e-1242.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2W9_9PHAE3.570e-1242.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLD7_9PHAE7.160e-1241.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDI2_9PHAE1.180e-1142.16Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5K541_9PHAE1.130e-1042.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE1.420e-1042.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHJ5_9PHAE3.610e-1055.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KED8_9PHAE4.860e-1045.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151394contigH-elongata_contig151394:91..411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.9775999-CDS-H-elongata_contig151394:90..4111622929894.9775999-CDS-H-elongata_contig151394:90..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151394 91..411 -
1691679198.7684135-CDS-H-elongata_contig151394:90..4111691679198.7684135-CDS-H-elongata_contig151394:90..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151394 91..411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151394.3403.1prot_H-elongata_contig151394.3403.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151394 91..411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151394.3403.1

>prot_H-elongata_contig151394.3403.1 ID=prot_H-elongata_contig151394.3403.1|Name=mRNA_H-elongata_contig151394.3403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
GVEGISLNRRKSALLANGAIREDLTEEQCIAGDSIRFTVVGQGMRVVGVP
VGTEQFKWDFVNQAVNGEPAVRALVPMNDAQAGFQILRLSAVSCLSHLLR
TEPLWS*
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mRNA from alignment at H-elongata_contig151394:91..411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151394.3403.1 ID=mRNA_H-elongata_contig151394.3403.1|Name=mRNA_H-elongata_contig151394.3403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig151394:91..411- (Himanthalia elongata Himel1 dioecious)
GGGGTAGAAGGAATTTCTTTGAACCGAAGAAAGTCGGCGCTGTTGGCAAA
TGGAGCAATACGAGAAGACCTCACGGAAGAGCAATGCATAGCGGGGGATA
GTATACGGTTCACGGTGGTTGGACAGGGAATGCGAGTTGTAGGAGTACCG
GTGGGAACAGAACAGTTTAAGTGGGATTTTGTTAATCAAGCAGTAAACGG
AGAACCAGCTGTCAGAGCCCTCGTCCCGATGAACGATGCTCAGGCGGGCT
TTCAGATTCTGCGCCTGTCAGCGGTTTCCTGTCTGTCACACCTCCTCCGC
ACAGAACCCTTATGGAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig151394:91..411-

>mRNA_H-elongata_contig151394.3403.1 ID=mRNA_H-elongata_contig151394.3403.1|Name=mRNA_H-elongata_contig151394.3403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig151394:91..411- (Himanthalia elongata Himel1 dioecious)
GGGGTAGAAGGAATTTCTTTGAACCGAAGAAAGTCGGCGCTGTTGGCAAA
TGGAGCAATACGAGAAGACCTCACGGAAGAGCAATGCATAGCGGGGGATA
GTATACGGTTCACGGTGGTTGGACAGGGAATGCGAGTTGTAGGAGTACCG
GTGGGAACAGAACAGTTTAAGTGGGATTTTGTTAATCAAGCAGTAAACGG
AGAACCAGCTGTCAGAGCCCTCGTCCCGATGAACGATGCTCAGGCGGGCT
TTCAGATTCTGCGCCTGTCAGCGGTTTCCTGTCTGTCACACCTCCTCCGC
ACAGAACCCTTATGGAGCTAAGGGGTAGAAGGAATTTCTTTGAACCGAAG
AAAGTCGGCGCTGTTGGCAAATGGAGCAATACGAGAAGACCTCACGGAAG
AGCAATGCATAGCGGGGGATAGTATACGGTTCACGGTGGTTGGACAGGGA
ATGCGAGTTGTAGGAGTACCGGTGGGAACAGAACAGTTTAAGTGGGATTT
TGTTAATCAAGCAGTAAACGGAGAACCAGCTGTCAGAGCCCTCGTCCCGA
TGAACGATGCTCAGGCGGGCTTTCAGATTCTGCGCCTGTCAGCGGTTTCC
TGTCTGTCACACCTCCTCCGCACAGAACCCTTATGGAGCTAA
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