mRNA_H-elongata_contig151143.3397.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151143.3397.1
Unique NamemRNA_H-elongata_contig151143.3397.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.830e-48
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            +GRLYDHACC +LYEMTVEDG+AVVTSVE RRVTKARPIPM TVELQKRASRFCHI SERTMHVAEALYQRGIISYPRTETEKFKREFDI
Sbjct:   68 RGRLYDHACCAILYEMTVEDGVAVVTSVEARRVTKARPIPMSTVELQKRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDI 157
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A8J6CBF4_DIALT (DNA topoisomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBF4_DIALT)

HSP 1 Score: 109 bits (273), Expect = 6.340e-26
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            +GRL+D   C VLYEM VE+  A V +V  RR T+A+PIP+ TVELQ+ ASR   I S+RTM +AE+LYQRG +SYPRTET+KFK   D+
Sbjct:  257 RGRLFDRLACVVLYEMCVEEPEATVVAVNRRRTTRAKPIPLATVELQREASRKLRIASDRTMAIAESLYQRGYLSYPRTETDKFKEGTDL 346
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.160e-25
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            +GRL+D      L E+  + G AVVT+V  R  T+ RP+PM TVELQ+RASRF  IPSER M  AEALYQRG++SYPRTET+ F RE D+
Sbjct:   85 RGRLFDRGVAAALAELCADAGTAVVTAVSARPQTRRRPLPMSTVELQRRASRFLRIPSERAMAAAEALYQRGVLSYPRTETDAFSRETDL 174
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A024GUU9_9STRA (DNA topoisomerase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUU9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.330e-24
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   10 RLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            RLYD  CC V+YE+ V++ IA +TSVE +   K +P+P+ TVELQKRASR+  I SE TM  AE LY +G ISYPRTET KFK   D+
Sbjct:  261 RLYDRLCCLVIYEILVQNPIAKITSVEKKPTCKRKPLPLTTVELQKRASRWLRISSEETMKAAEHLYNKGFISYPRTETSKFKEGTDL 348
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A024GV12_9STRA (DNA topoisomerase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GV12_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.410e-24
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   10 RLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            RLYD  CC V+YE+ V++ IA +TSVE +   K +P+P+ TVELQKRASR+  I SE TM  AE LY +G ISYPRTET KFK   D+
Sbjct:  261 RLYDRLCCLVIYEILVQNPIAKITSVEKKPTCKRKPLPLTTVELQKRASRWLRISSEETMKAAEHLYNKGFISYPRTETSKFKEGTDL 348
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A7I8L3W2_SPIIN (DNA topoisomerase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L3W2_SPIIN)

HSP 1 Score: 101 bits (252), Expect = 4.290e-23
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            +GRL+D+ C  ++YEM VE  IA V +V+ ++  K  P P+ TVELQKRASR+  I SERTM VAE LYQ G ISYPRTET+ F    D+
Sbjct:  271 RGRLFDYTCSVIIYEMCVEQPIATVKNVKQQQKLKYPPFPLSTVELQKRASRYFRISSERTMKVAEELYQAGFISYPRTETDSFSVNTDL 360
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A0D1WU41_9EURO (DNA topoisomerase n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1WU41_9EURO)

HSP 1 Score: 100 bits (250), Expect = 7.660e-23
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:   13 LYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK 276
            L+D A  T+L+E  +++ +A VT V+ +  +K RP+P+ TVELQK+ SRF H+ S + M VAE LYQ+G ISYPRTET++F REFD +
Sbjct:  261 LFDRAAVTILFEACLDEKLATVTKVQKKPTSKWRPLPLTTVELQKQGSRFLHMTSHQVMSVAEKLYQKGFISYPRTETDQFPREFDFQ 348
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A1D1YBY8_9ARAE (DNA topoisomerase (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBY8_9ARAE)

HSP 1 Score: 100 bits (250), Expect = 8.000e-23
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK 276
            +GRL+D+ C  +LYEM VE  IA V +V  +   K  P P+ TVELQKRASR+  I SERTM VAE LYQ G ISYPRTET+ F    D++
Sbjct:  280 RGRLFDYTCSVILYEMCVEQPIATVKNVRHQEKLKYPPYPLSTVELQKRASRYFRISSERTMKVAEELYQAGFISYPRTETDGFSVNTDLR 370
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A8H4A1Y6_GIGMA (DNA topoisomerase n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A1Y6_GIGMA)

HSP 1 Score: 99.4 bits (246), Expect = 2.760e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK 276
            +  L+D   C ++YE  +E+  A V  V+ + V K +P P+ TVELQK  SR+ HI S+R MHVAE LY +G+ISYPRTET++F ++FD +
Sbjct:  254 RNHLFDRLACVIIYEKCLENPTATVVEVKSKEVKKWKPYPLTTVELQKTGSRYLHISSDRLMHVAEQLYVKGLISYPRTETDQFDKQFDFR 344
[Close]
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: UPI000D2F27BE (DNA topoisomerase 3-alpha isoform X2 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI000D2F27BE)

HSP 1 Score: 99.4 bits (246), Expect = 2.780e-22
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    4 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 273
            +G L+D+ C  ++YEM +E+  A VT V P+   K  P P+ T+EL+KRASR+  + SERTM VAE LYQ G ISYPRTET+ F    D+
Sbjct:  264 RGHLFDYTCAVIIYEMCIEEPTATVTKVTPKEKPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDL 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI2.830e-4892.22DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A8J6CBF4_DIALT6.340e-2658.89DNA topoisomerase n=1 Tax=Diacronema lutheri TaxID... [more]
A0A835YM61_9STRA1.160e-2558.89DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A024GUU9_9STRA1.330e-2457.95DNA topoisomerase n=1 Tax=Albugo candida TaxID=653... [more]
A0A024GV12_9STRA1.410e-2457.95DNA topoisomerase n=2 Tax=Albugo candida TaxID=653... [more]
A0A7I8L3W2_SPIIN4.290e-2355.56DNA topoisomerase n=2 Tax=Spirodela intermedia Tax... [more]
A0A0D1WU41_9EURO7.660e-2352.27DNA topoisomerase n=1 Tax=Exophiala sideris TaxID=... [more]
A0A1D1YBY8_9ARAE8.000e-2356.04DNA topoisomerase (Fragment) n=1 Tax=Anthurium amn... [more]
A0A8H4A1Y6_GIGMA2.760e-2248.35DNA topoisomerase n=1 Tax=Gigaspora margarita TaxI... [more]
UPI000D2F27BE2.780e-2251.11DNA topoisomerase 3-alpha isoform X2 n=1 Tax=Medic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151143contigH-elongata_contig151143:389..1152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.8e-41
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.5806181-CDS-H-elongata_contig151143:388..5371622929894.5806181-CDS-H-elongata_contig151143:388..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151143 389..537 +
1691679198.6459265-CDS-H-elongata_contig151143:388..5371691679198.6459265-CDS-H-elongata_contig151143:388..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151143 389..537 +
1622929894.601226-CDS-H-elongata_contig151143:1022..11521622929894.601226-CDS-H-elongata_contig151143:1022..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151143 1023..1152 +
1691679198.6579697-CDS-H-elongata_contig151143:1022..11521691679198.6579697-CDS-H-elongata_contig151143:1022..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151143 1023..1152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151143.3397.1prot_H-elongata_contig151143.3397.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151143 389..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151143.3397.1

>prot_H-elongata_contig151143.3397.1 ID=prot_H-elongata_contig151143.3397.1|Name=mRNA_H-elongata_contig151143.3397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
NQGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKR
ASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK*
back to top

mRNA from alignment at H-elongata_contig151143:389..1152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151143.3397.1 ID=mRNA_H-elongata_contig151143.3397.1|Name=mRNA_H-elongata_contig151143.3397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=764bp|location=Sequence derived from alignment at H-elongata_contig151143:389..1152+ (Himanthalia elongata Himel1 dioecious)
AATCAGGGCCGGCTCTACGATCACGCCTGTTGTACTGTGCTGTACGAGAT
GACGGTGGAGGACGGGATTGCGGTGGTGACCAGCGTCGAGCCTCGACGGG
TTACCAAGGCGCGGCCCATCCCCATGTGTACGGTGGAGTTGCAGAAGAGG
TGATTTGTCGCCCTCTGGGGCGGGAGGGGGTGGTAAAAAGTGGCAGGGAA
GAGAGGATATTGTTTTTTTCAAAAGAGCGTCAGCAGCTACTATGTGATAG
GTTTTAGATGAAGCAAGGACCCTAGTGGGAGGATCTAACCACGGCGTCGT
GTGTTCACTGGAGCTTTATATTTTTGTTGGGACAGGGTTGTGAACCATGA
CCCACCATGTCGTCCAATCAGCACTGACTTGAGTGGAGCAGTTATTCACG
GGTTGCAAACTTGTTCCAACGTTGACCCCCCCCCCTCAAGCGGTCCTCCT
TGTTGCATTTCCATGCAGACGCCGCCTTGAGAGGCGCGCCCACCTCACCC
ACCGCATGGAAACCCTTATATGTATTTTTGGCTTTGTTTTGTGTAAGGTT
TTCGCGCGCCCCTCTCCCCCCCTCTATATTTCGGCATGTTTCCCCGTTTC
CATGCACCGTCAATTTTGACGTTTTTTGCTCAAGGGCTTCACGATTTTGC
CACATCCCGTCCGAGCGCACCATGCACGTTGCGGAGGCGTTATACCAGCG
GGGTATCATCAGTTACCCCAGGACAGAGACGGAGAAGTTCAAGCGTGAAT
TCGACATTAAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig151143:389..1152+

>mRNA_H-elongata_contig151143.3397.1 ID=mRNA_H-elongata_contig151143.3397.1|Name=mRNA_H-elongata_contig151143.3397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig151143:389..1152+ (Himanthalia elongata Himel1 dioecious)
AATCAGGGCCGGCTCTACGATCACGCCTGTTGTACTGTGCTGTACGAGAT
GACGGTGGAGGACGGGATTGCGGTGGTGACCAGCGTCGAGCCTCGACGGG
TTACCAAGGCGCGGCCCATCCCCATGTGTACGGTGGAGTTGCAGAAGAGA
ATCAGGGCCGGCTCTACGATCACGCCTGTTGTACTGTGCTGTACGAGATG
ACGGTGGAGGACGGGATTGCGGTGGTGACCAGCGTCGAGCCTCGACGGGT
TACCAAGGCGCGGCCCATCCCCATGTGTACGGTGGAGTTGCAGAAGAGGG
CTTCACGATTTTGCCACATCCCGTCCGAGCGCACCATGCACGTTGCGGAG
GCGTTATACCAGCGGGGTATCATCAGTTACCCCAGGACAGAGACGGAGAA
GTTCAAGCGTGAATTCGACATTAAGTGAGGCTTCACGATTTTGCCACATC
CCGTCCGAGCGCACCATGCACGTTGCGGAGGCGTTATACCAGCGGGGTAT
CATCAGTTACCCCAGGACAGAGACGGAGAAGTTCAAGCGTGAATTCGACA
TTAAGTGA
back to top