mRNA_H-elongata_contig150791.3383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150791.3383.1
Unique NamemRNA_H-elongata_contig150791.3383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: UPI000738B02F (serine/threonine protein kinase n=1 Tax=Chloracidobacterium thermophilum TaxID=458033 RepID=UPI000738B02F)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   13 LLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            +L++V  G+ F HR  I+H DLK +N  LKRR DGS T+ + DFGLA
Sbjct:  125 ILREVCAGVEFAHRRNIIHRDLKPDNIMLKRRDDGSATVKVLDFGLA 171          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: UPI001B8BA7EF (serine/threonine protein kinase n=1 Tax=Chloracidobacterium aggregatum TaxID=2851959 RepID=UPI001B8BA7EF)

HSP 1 Score: 53.5 bits (127), Expect = 7.580e-7
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   13 LLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            +L++V   + F HR  I+H DLK +N  LKRR DGS T+ + DFGLA
Sbjct:  125 ILREVCAAVEFAHRRNIIHRDLKPDNIMLKRRDDGSATVKVLDFGLA 171          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: UPI001B8B4A12 (serine/threonine protein kinase n=2 Tax=Chloracidobacterium TaxID=458032 RepID=UPI001B8B4A12)

HSP 1 Score: 53.5 bits (127), Expect = 7.580e-7
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   13 LLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            +L++V   + F HR  I+H DLK +N  LKRR DGS T+ + DFGLA
Sbjct:  125 ILREVCAAVEFAHRRNIIHRDLKPDNIMLKRRDDGSTTVKVLDFGLA 171          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: G2LID8_CHLTF (Non-specific serine/threonine protein kinase n=2 Tax=Chloracidobacterium thermophilum TaxID=458033 RepID=G2LID8_CHLTF)

HSP 1 Score: 53.5 bits (127), Expect = 7.580e-7
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   13 LLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            +L++V   + F HR  I+H DLK +N  LKRR DGS T+ + DFGLA
Sbjct:  125 ILREVCAAVEFAHRRNIIHRDLKPDNIMLKRRDDGSTTVKVLDFGLA 171          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: UPI001FAED77C (serine/threonine protein kinase n=1 Tax=unclassified Geothrix TaxID=2647902 RepID=UPI001FAED77C)

HSP 1 Score: 53.5 bits (127), Expect = 7.620e-7
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   13 LLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGL 150
            L++++  G+   H  G+VH+DLKL N  L+RR+DG++  V+GDFG+
Sbjct:  166 LVRELALGVHAAHARGLVHLDLKLGNVLLQRREDGTFRPVVGDFGM 211          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: A0A7Y5NUJ2_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5NUJ2_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 1.030e-6
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    4 VIRLLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            V+ +L  V +GL  IH  G++H DLKLEN F+ +R DG   + I DFG+A
Sbjct:  119 VVSMLAQVASGLDKIHEEGVIHRDLKLENLFVTKRDDGRSHIKILDFGVA 168          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: A0A1Y1L2H1_PHOPY (Protein kinase domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L2H1_PHOPY)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-6
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   10 RLLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLAD 156
            RL   +V+G+G++H+ GIVH DLKLEN  L R ++    ++I DFG A+
Sbjct:   67 RLFSQLVSGVGYLHKKGIVHRDLKLENLLLDRNRN----IIITDFGFAN 111          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: UPI001B8B400A (serine/threonine protein kinase n=1 Tax=Chloracidobacterium validum TaxID=2821543 RepID=UPI001B8B400A)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    7 IRLLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            I +L +V   + F HR  ++H DLK +N  LKRR DGS T+ + DFGLA
Sbjct:  123 IPILGEVCAAVEFAHRRNVIHRDLKPDNIMLKRRDDGSTTVKVLDFGLA 171          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: TESK1_RAT (Dual specificity testis-specific protein kinase 1 n=22 Tax=Euarchontoglires TaxID=314146 RepID=TESK1_RAT)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    7 IRLLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLAD 156
            + L  D+  GL ++H  G+ H DL  +N  L RR+DG +T V+GDFGLA+
Sbjct:  148 LHLALDIAQGLRYLHAKGVFHRDLTSKNC-LVRREDGGFTAVVGDFGLAE 196          
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Match: A0A7S1VST0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VST0_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.920e-6
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   10 RLLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGLA 153
            R+L+ +V GL +IHR G+VH DLK EN FL    D +  + +GDFGLA
Sbjct:   40 RVLRQIVEGLDYIHRMGVVHRDLKPENVFL----DTAGDVKLGDFGLA 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150791.3383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000738B02F1.160e-753.19serine/threonine protein kinase n=1 Tax=Chloracido... [more]
UPI001B8BA7EF7.580e-751.06serine/threonine protein kinase n=1 Tax=Chloracido... [more]
UPI001B8B4A127.580e-751.06serine/threonine protein kinase n=2 Tax=Chloracido... [more]
G2LID8_CHLTF7.580e-751.06Non-specific serine/threonine protein kinase n=2 T... [more]
UPI001FAED77C7.620e-745.65serine/threonine protein kinase n=1 Tax=unclassifi... [more]
A0A7Y5NUJ2_9DELT1.030e-648.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1Y1L2H1_PHOPY1.110e-646.94Protein kinase domain-containing protein (Fragment... [more]
UPI001B8B400A1.420e-648.98serine/threonine protein kinase n=1 Tax=Chloracido... [more]
TESK1_RAT1.420e-646.00Dual specificity testis-specific protein kinase 1 ... [more]
A0A7S1VST0_9EUKA1.920e-652.08Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150791contigH-elongata_contig150791:1129..1293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.3295152-CDS-H-elongata_contig150791:1128..12931622929892.3295152-CDS-H-elongata_contig150791:1128..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150791 1129..1293 -
1691679197.755854-CDS-H-elongata_contig150791:1128..12931691679197.755854-CDS-H-elongata_contig150791:1128..1293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150791 1129..1293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150791.3383.1prot_H-elongata_contig150791.3383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150791 1129..1293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150791.3383.1

>prot_H-elongata_contig150791.3383.1 ID=prot_H-elongata_contig150791.3383.1|Name=mRNA_H-elongata_contig150791.3383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
AVIRLLQDVVTGLGFIHRCGIVHMDLKLENAFLKRRQDGSYTLVIGDFGL
ADGE*
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mRNA from alignment at H-elongata_contig150791:1129..1293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150791.3383.1 ID=mRNA_H-elongata_contig150791.3383.1|Name=mRNA_H-elongata_contig150791.3383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig150791:1129..1293- (Himanthalia elongata Himel1 dioecious)
GCCGTCATTAGGCTCCTGCAGGATGTCGTCACGGGGCTGGGATTTATACA CCGCTGTGGCATCGTCCACATGGACTTGAAGTTGGAAAATGCTTTTCTAA AACGCCGCCAGGACGGAAGCTACACGCTGGTGATCGGTGACTTTGGACTA GCAGATGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig150791:1129..1293-

>mRNA_H-elongata_contig150791.3383.1 ID=mRNA_H-elongata_contig150791.3383.1|Name=mRNA_H-elongata_contig150791.3383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig150791:1129..1293- (Himanthalia elongata Himel1 dioecious)
GCCGTCATTAGGCTCCTGCAGGATGTCGTCACGGGGCTGGGATTTATACA
CCGCTGTGGCATCGTCCACATGGACTTGAAGTTGGAAAATGCTTTTCTAA
AACGCCGCCAGGACGGAAGCTACACGCTGGTGATCGGTGACTTTGGACTA
GCAGATGGTGAGTGAGCCGTCATTAGGCTCCTGCAGGATGTCGTCACGGG
GCTGGGATTTATACACCGCTGTGGCATCGTCCACATGGACTTGAAGTTGG
AAAATGCTTTTCTAAAACGCCGCCAGGACGGAAGCTACACGCTGGTGATC
GGTGACTTTGGACTAGCAGATGGTGAGTGA
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