mRNA_H-elongata_contig150476.3368.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150476.3368.1
Unique NamemRNA_H-elongata_contig150476.3368.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150476.3368.1 vs. uniprot
Match: A0A6H5KAD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.190e-22
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:   13 GFLNINDPKVSGGSRTRQESDAIVSWSHRKLAYALDPGAWMLLHIGNIVVRRRAD----------GTASVVAKVEGRADEERGLDVTLSFGGEKMHRCVNLDVGFAAIAPLRLSWDIIR 339
            GFL+  D + + G   RQ+ +A VSW HR+  +  +PG W+LLHIGNI+VR  ++          G +S      G A   RG DV +SFGGE  +   NL+V FAAIAPLRLSWDI R
Sbjct:  123 GFLSTTDSQRAEG--VRQDGEASVSWIHRQEYHEDNPGGWLLLHIGNIMVRESSEAQQSAAATEGGASSATIGTGGPAVGNRGRDVAISFGGENPNWMSNLEVDFAAIAPLRLSWDIER 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150476.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAD9_9PHAE1.190e-2246.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150476contigH-elongata_contig150476:1113..1451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.9385953-CDS-H-elongata_contig150476:1112..14511622929890.9385953-CDS-H-elongata_contig150476:1112..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150476 1113..1451 -
1691679197.1088681-CDS-H-elongata_contig150476:1112..14511691679197.1088681-CDS-H-elongata_contig150476:1112..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150476 1113..1451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150476.3368.1prot_H-elongata_contig150476.3368.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150476 1113..1451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150476.3368.1

>prot_H-elongata_contig150476.3368.1 ID=prot_H-elongata_contig150476.3368.1|Name=mRNA_H-elongata_contig150476.3368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
TGRRGFLNINDPKVSGGSRTRQESDAIVSWSHRKLAYALDPGAWMLLHIG
NIVVRRRADGTASVVAKVEGRADEERGLDVTLSFGGEKMHRCVNLDVGFA
AIAPLRLSWDIIR
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mRNA from alignment at H-elongata_contig150476:1113..1451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150476.3368.1 ID=mRNA_H-elongata_contig150476.3368.1|Name=mRNA_H-elongata_contig150476.3368.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig150476:1113..1451- (Himanthalia elongata Himel1 dioecious)
ACTGGAAGACGTGGGTTTCTAAACATCAATGACCCCAAGGTCTCGGGCGG
GTCCCGCACTCGACAAGAATCAGACGCGATTGTCTCATGGTCACACAGAA
AACTGGCATATGCCCTTGATCCGGGAGCTTGGATGCTTTTACACATTGGG
AATATCGTGGTGCGTCGTCGGGCCGACGGCACGGCGTCGGTGGTTGCCAA
AGTTGAAGGTAGAGCCGATGAAGAAAGGGGGCTAGATGTAACTCTGAGCT
TTGGAGGTGAAAAAATGCACAGGTGTGTCAACCTCGATGTTGGATTCGCC
GCCATCGCCCCTCTGCGACTTTCCTGGGACATCATACGC
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Coding sequence (CDS) from alignment at H-elongata_contig150476:1113..1451-

>mRNA_H-elongata_contig150476.3368.1 ID=mRNA_H-elongata_contig150476.3368.1|Name=mRNA_H-elongata_contig150476.3368.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig150476:1113..1451- (Himanthalia elongata Himel1 dioecious)
ACTGGAAGACGTGGGTTTCTAAACATCAATGACCCCAAGGTCTCGGGCGG
GTCCCGCACTCGACAAGAATCAGACGCGATTGTCTCATGGTCACACAGAA
AACTGGCATATGCCCTTGATCCGGGAGCTTGGATGCTTTTACACATTGGG
AATATCGTGGTGCGTCGTCGGGCCGACGGCACGGCGTCGGTGGTTGCCAA
AGTTGAAGGTAGAGCCGATGAAGAAAGGGGGCTAGATGTAACTCTGAGCT
TTGGAGGTGAAAAAATGCACAGGTGTGTCAACCTCGATGTTGGATTCGCC
GCCATCGCCCCTCTGCGACTTTCCTGGGACATCATACGCACTGGAAGACG
TGGGTTTCTAAACATCAATGACCCCAAGGTCTCGGGCGGGTCCCGCACTC
GACAAGAATCAGACGCGATTGTCTCATGGTCACACAGAAAACTGGCATAT
GCCCTTGATCCGGGAGCTTGGATGCTTTTACACATTGGGAATATCGTGGT
GCGTCGTCGGGCCGACGGCACGGCGTCGGTGGTTGCCAAAGTTGAAGGTA
GAGCCGATGAAGAAAGGGGGCTAGATGTAACTCTGAGCTTTGGAGGTGAA
AAAATGCACAGGTGTGTCAACCTCGATGTTGGATTCGCCGCCATCGCCCC
TCTGCGACTTTCCTGGGACATCATACGC
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