mRNA_H-elongata_contig15047.3367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15047.3367.1
Unique NamemRNA_H-elongata_contig15047.3367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A6H5L2C7_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2C7_9PHAE)

HSP 1 Score: 573 bits (1476), Expect = 2.960e-189
Identity = 288/322 (89.44%), Postives = 302/322 (93.79%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGGKWEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRK 966
            RPE+PVIVGGLMAAEEGLAMVR RAKRHRWHGKTLKSNDPLVVSAGWRRFQTQP+FA EDPNERQRYLKYTPEHMHCF YFYGP+IPQNTGIMAFQ+ G+TTTGFRVA+TGT LELDAKFEVVKKLKLVGYPDKIFKKTAFI GMFNSDLEVAKFEGAAVRTVSGIRGQ+KKSAKGG PGRCRATFEDKILKSDV+FCRLWVPVEI KY+NPVTSLLEKG +W+GM NTAQLRRA G+ VPVNKDSLYKPIER  RKFN L VPKKLQA LPFASKPKL PKRKKKGYLS RAVVMEPAERRKVSLMQAL+TIR EK+AIRK
Sbjct:  902 RPENPVIVGGLMAAEEGLAMVRTRAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPVFATEDPNERQRYLKYTPEHMHCFCYFYGPIIPQNTGIMAFQSMGNTTTGFRVALTGTALELDAKFEVVKKLKLVGYPDKIFKKTAFIKGMFNSDLEVAKFEGAAVRTVSGIRGQLKKSAKGGEPGRCRATFEDKILKSDVVFCRLWVPVEIRKYYNPVTSLLEKG-EWQGMLNTAQLRRAQGQSVPVNKDSLYKPIERAPRKFNSLPVPKKLQAALPFASKPKLAPKRKKKGYLSKRAVVMEPAERRKVSLMQALATIRNEKVAIRK 1222
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A7S3XSS7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSS7_HETAK)

HSP 1 Score: 429 bits (1103), Expect = 5.310e-143
Identity = 223/365 (61.10%), Postives = 275/365 (75.34%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKK--SAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGG--KWEG--MRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQG 1077
             P++PVI+GGL+  E  LA+V+AR K+HRWH + LK++DPLV S GWRRFQ+ P++++ED N+RQR+LKYTPEHMHC + FY P+IP NTGI+AFQT      GFR+ MTGT LELD  F+VVKKLKLVG P KIFK TAFI GMFNS+LEVAKFEGAA++TVSGIRG IKK  SA+ G PG  RATFEDKIL SD++FCR WVPV   K++NP+T+LLE G   +W+   M+   +LRR +  P PVN DSLYKPIER  R FN L +PK +QA LPFASKPK   K+  KGYLS RAVVMEP ER++ +L+QAL+TIR EK+  RKEA  +RKE   +K AKV E FD  K+ +KK   + +G
Sbjct:  106 NPKAPVILGGLLGHEANLALVQARVKKHRWHERVLKTHDPLVFSVGWRRFQSLPMYSIEDQNDRQRFLKYTPEHMHCHATFYAPLIPANTGILAFQTLDKELAGFRICMTGTALELDDSFDVVKKLKLVGTPLKIFKNTAFIQGMFNSELEVAKFEGAAIKTVSGIRGTIKKAASAREGPPGTFRATFEDKILMSDIVFCRTWVPVAPKKFYNPLTNLLEGGTSEEWDKGRMQTVGELRRKLNLPTPVNNDSLYKPIERAPRAFNKLKIPKGVQAALPFASKPKQRDKKANKGYLSKRAVVMEPEERKRTALLQALNTIRNEKVQKRKEANAKRKEEYEKKQAKVDEFFDPYKKQQKKTAVQGKG 470
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A835YHK8_9STRA (Ribosome biogenesis protein BMS1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHK8_9STRA)

HSP 1 Score: 448 bits (1153), Expect = 1.640e-142
Identity = 238/374 (63.64%), Postives = 282/374 (75.40%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPN-ERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSA------KGGNP----GRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGGK-WEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPK---LMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQG 1077
            +PE PV+VGGL + E  L +VR R KRHRWHG+ LKSNDPLV S GWRRFQ+ P++A+ED +  R R+LKYTPEHMHC   FYGPV P  TG++AFQ+  +  TGFRV++TGT LELDA F VVKKLKLVG+PDK+ KKTAFI GMF+SDLEVA+FEGA+++TVSGIRGQIKK+A       GGN     GR RATFEDKIL SD + CRLW PVE  +Y+NPVTSLL+ GG  W+GMR TA LRR    PVPVNKDSLYKPIER  RKFNP+ VPK LQA LPF SKPK    + K  +KGYL +RAVV+EP ER+K +LM AL TIR EK+AIR+ A  RR+  + +K AKV EAF  VK  E+KRK+R  G
Sbjct:  791 KPERPVVVGGLASHETSLGLVRCRVKRHRWHGRVLKSNDPLVFSLGWRRFQSMPLYAMEDESAHRHRFLKYTPEHMHCECVFYGPVCPPGTGLLAFQSLKEGGTGFRVSLTGTVLELDASFSVVKKLKLVGHPDKVHKKTAFIKGMFSSDLEVARFEGASLKTVSGIRGQIKKAAGSGKKGSGGNSEGGRGRFRATFEDKILMSDTVICRLWAPVESKRYYNPVTSLLDGGGGGWQGMRTTAMLRREQALPVPVNKDSLYKPIERRPRKFNPMPVPKSLQAALPFKSKPKDRKALSKGARKGYLKSRAVVLEPQERKKAALMAALGTIRNEKVAIRRAANARRRAEHEKKQAKVVEAFADVKAAERKRKFRDMG 1164
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A7S0Y850_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y850_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 9.360e-138
Identity = 211/362 (58.29%), Postives = 261/362 (72.10%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGGK--WEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGK 1080
             PE P+++GGL   E  L  VR R K+HRWH K LK NDPLV S GWRRFQ+ P F+ ED N R RYLKYTPEHMHCF+ FYGP  P NTGI+A Q   +   GFR+A TG  LEL+A F VVKKLKLVG P KI+K TAF+ GMFNSDLEV++FEGA++RTVSGIRGQ+KK+ + G PG  RATFEDKIL+SD+IFCR W+PV++ +Y+NPVT+ L   G   W GMRN A ++   G P+ VN DS+YKPIER  RKF  L V KK++  LPFASKPK  PK++K GYLS RAVVME +E++K + +QA++TIR EK+ +RKE          +K AK  EA    ++  KKR+YRA+GK
Sbjct:  155 NPELPLVIGGLTPQETNLGFVRCRFKKHRWHKKILKCNDPLVFSIGWRRFQSIPTFSTEDDNNRHRYLKYTPEHMHCFATFYGPQSPPNTGILAIQRMSENIAGFRIAATGVVLELNANFPVVKKLKLVGTPTKIYKNTAFVTGMFNSDLEVSRFEGASIRTVSGIRGQVKKAIREGQPGSFRATFEDKILRSDIIFCRTWMPVKMKEYYNPVTNHLSSKGTSGWHGMRNKALMQLETGTPIEVNPDSIYKPIERPERKFRKLRVSKKIEGGLPFASKPKDEPKKRKGGYLSQRAVVMEASEKKKFTFLQAVNTIRNEKVKVRKEKKRSSNLEKAKKNAKRDEAIAAARKVNKKRQYRAEGK 516
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A7S2WQ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WQ77_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 1.650e-133
Identity = 209/359 (58.22%), Postives = 266/359 (74.09%), Query Frame = 1 
Query:    4 PESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGGKWEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGK 1080
            PE P+++GGL   E     VR R K+HRWH + LK NDPLV S GWRRFQ+ P+F+ ED N R RYLKYTPEHMHC + F+GP +P NTGI+A Q       GFR+A TG  LEL+  F++VKKLKLVG P KI++ +AFI GMFNSDLEV++FEGA++RTVSGIRGQ+KK+ + G PG  RATFEDKIL+SD++FCR W+PVEI KY+NPVTSLL K G W GM++ AQL+     P+ VN DS+YKPIER  +KFN L VPKKL+  LP+ASK K   KR KK Y+S RAVVM+ +E++K + MQA+ +IR EK++IRKE+  RRK    ++  K SE F+ VK+  KK++YR +GK
Sbjct:  447 PELPLVLGGLTPQETNRGYVRCRFKKHRWHKRILKCNDPLVFSVGWRRFQSMPVFSTEDQNGRHRYLKYTPEHMHCHATFFGPQVPPNTGILAIQKISGNIPGFRIAATGVVLELNESFDIVKKLKLVGTPYKIYRNSAFITGMFNSDLEVSRFEGASLRTVSGIRGQLKKALREGQPGSFRATFEDKILRSDIVFCRTWMPVEIKKYYNPVTSLLSKDG-WRGMKSKAQLQIETQTPIEVNPDSIYKPIERPEKKFNKLFVPKKLEEALPYASKHKDEKKRSKKSYVSKRAVVMDASEKKKYTFMQAVHSIRNEKLSIRKESNQRRKVERAKQDLKKSEMFEAVKKANKKKQYRTEGK 804
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A7S1GAA5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAA5_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 3.450e-133
Identity = 208/360 (57.78%), Postives = 260/360 (72.22%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLL-EKGGKWEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQG 1077
            R   P++ GGL+  EEGLA++  R KRHRWH + LK+NDPL+VS GWRRFQT P+  ++D NER R +KYTPEHMHC +  YGPV P NTG +AF+T  + T GFRVA TGT LEL     VVKKLKLVGYP KIF+KTA + GMFNSDLEVAKF+GAA+RTVSG+RGQ+KK A G  PG  RATFEDK+L SD++FCR WV V+  +Y+NPVTSLL  +G  W GM+   +LR+    PVP   DSLY   ER  RKF+ L +P KL+A LPFASKPK   K  K  YLS RAVVM+  ERR  +LMQ + T+ KEKI  R+E A  R+EA+ +K A ++  FD +++++KKR+Y+A G
Sbjct:  110 RSTHPLLAGGLLNQEEGLALLHCRIKRHRWHPRILKTNDPLIVSLGWRRFQTLPLLHMQDDNERHRAIKYTPEHMHCQATMYGPVTPPNTGFIAFKTLSNMTAGFRVAATGTILELQHTVRVVKKLKLVGYPQKIFRKTALVEGMFNSDLEVAKFQGAALRTVSGVRGQVKKPAPG-RPGTFRATFEDKVLMSDIVFCRTWVQVDPKRYYNPVTSLLLPEGEAWAGMKTVGELRKERAVPVPTKPDSLYHEQERKERKFHALRIPSKLEAALPFASKPKQDRKHAKPSYLSKRAVVMDATERRAHTLMQQVHTLAKEKIKKRRERAAARREAHEKKNALLARVFDPIEKEKKKRRYKADG 468
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: B7FPQ2_PHATC (Ribosome biogenesis protein BMS1 n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPQ2_PHATC)

HSP 1 Score: 419 bits (1078), Expect = 2.670e-132
Identity = 213/362 (58.84%), Postives = 259/362 (71.55%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKG--GKWEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGK 1080
             P  P+++GGL   E  + ++R R K+HRWH K LK NDPLV S GWRRFQ+ P F+ ED N R RYLKYTPEHMHC + FYGP +P NTGI+A Q       GFR+A TG  LELDA F +VKKLKLVG P KI+K TAF+ GMFNSDLEV++FEGA+++TVSGIRGQ+KKS + G PG  RATFEDKIL SD+IFCR W+PVEI KYFNPVT+ L     G W GM+  AQL+     P+ VN DS+YKPIER  R F  L VPK+L+  LP+ +KPK + KRKKKGY+S RAVVME  ER+K + +QAL+TIRKEK+AIRK     RK       AK  EA   +++  KKR+YRA+GK
Sbjct:  722 NPHMPLVLGGLTPQETSMGLIRCRFKKHRWHRKILKCNDPLVFSVGWRRFQSMPTFSTEDQNGRYRYLKYTPEHMHCLATFYGPQVPPNTGILAIQNLSGNVAGFRIAATGIALELDASFPIVKKLKLVGTPTKIYKNTAFVTGMFNSDLEVSRFEGASIKTVSGIRGQVKKSLREGQPGSFRATFEDKILLSDIIFCRTWMPVEIKKYFNPVTNHLVGNVLGGWRGMKPKAQLQHETKTPIEVNADSIYKPIERPDRHFKKLIVPKRLEQALPYKNKPKNLEKRKKKGYVSNRAVVMEADERKKTTFIQALNTIRKEKVAIRKAKNEERKRDKAXXXAKKDEAILAIRKANKKRQYRAEGK 1083
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A2P4X1F4_9STRA (DUF663 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X1F4_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 4.100e-132
Identity = 215/366 (58.74%), Postives = 271/366 (74.04%), Query Frame = 1 
Query:    4 PESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLE--KGGKWEG---MRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKR-KKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGKE 1083
            P++P++VGGL   E+ L +VR R K+HRWH K LK+NDPLV S GWRRFQ+ P++++ED NER RYLKYTPEHMHC +  +GP+ P NTG++AFQT  +   GFRV+ TG  LELD KF VVKKLKL+G P KI K TAFI GMFN++LEVAKFEGA+VRTVSG+RG+IKK+ +G   G  RATFEDKILKSD++FCR WVPVE  + +NPVTSLL   KG K      M+ T +LR+     VPVN DSLYKPI RT RKF+ L VPKKLQA LPFASKPK   K+  KKGYL++RAVV+EP E++K   M  ++T+R+++ A RKE   +R   N ++  +  + F+GV + EKK KYRA+GKE
Sbjct:  284 PKNPIVVGGLPNMEDSLGLVRMRFKKHRWHKKILKTNDPLVFSIGWRRFQSLPMYSIEDTNERHRYLKYTPEHMHCHATIFGPMCPPNTGVLAFQTLSNNAEGFRVSGTGVVLELDHKFNVVKKLKLIGTPSKIHKNTAFIKGMFNTELEVAKFEGASVRTVSGVRGRIKKALRG-EKGDFRATFEDKILKSDLVFCRTWVPVEPKQLYNPVTSLLTNVKGAKKSTLGLMKTTYELRKEQKLAVPVNPDSLYKPIVRTERKFSALKVPKKLQANLPFASKPKEDKKKGAKKGYLASRAVVLEPEEKKKYGFMLRVNTVRRDREATRKERQSQRNAENLKRKQREEKQFEGVHKAEKKAKYRAEGKE 648
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A448Z3P6_9STRA (Bms1-type G domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3P6_9STRA)

HSP 1 Score: 416 bits (1070), Expect = 2.110e-130
Identity = 210/362 (58.01%), Postives = 263/362 (72.65%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGGK--WEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGK 1080
             PE P+++GGL   E  L  VR R K+HRWH K LK NDPLV S GWRRFQ+ P F+ ED N R RYLKYTPEHMHCF+ FYGP  P NTGI+A Q   +  +GFR+A TG  LELDA F VVKKLKLVG P KI+K TAF+ GMFNSDLEV++FEGAA+RTVSGIRGQ+KK+ + G PG  RATFEDKI++SD++FCR W+PV++ +Y+NPVT+ L   G   W GMRN A ++   G P+ VN DS+YKPIER  RKF  L VPKKL++ LPFA+KPK  PK++K GYL  RAVVME +E++K + +QA++TIR EK+  RKE     +    +K AK  EA    ++  +KR+YRA+GK
Sbjct:  808 NPEQPLVLGGLTPQETKLGFVRCRFKKHRWHKKILKCNDPLVFSIGWRRFQSIPTFSTEDDNGRHRYLKYTPEHMHCFATFYGPQCPPNTGILAIQRMSENISGFRIAATGVVLELDANFPVVKKLKLVGTPTKIYKNTAFVTGMFNSDLEVSRFEGAAIRTVSGIRGQVKKAIREGQPGSFRATFEDKIIRSDIVFCRTWMPVKMKEYYNPVTNHLSSKGTSGWYGMRNKALMQLETGTPIEVNPDSIYKPIERPERKFRKLRVPKKLESNLPFANKPKDDPKKRKGGYLERRAVVMEKSEKKKFTFLQAVNTIRNEKVKSRKEKKRLSRIEKDKKNAKKEEAIAAARKVNRKRQYRAEGK 1169
[Close]
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Match: A0A024FX96_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FX96_9STRA)

HSP 1 Score: 410 bits (1054), Expect = 1.220e-129
Identity = 208/361 (57.62%), Postives = 269/361 (74.52%), Query Frame = 1 
Query:    1 RPESPVIVGGLMAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDPNERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTGTTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVRTVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFNPVTSLLEKGGKWEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPLSVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALSTIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGKE 1083
             PE+P+IVGGL   E+ L +VR R K+HRWH K LK+NDPLV S GWRRFQ+ PI+++ED NER RYLKYTPEHMHC +  YGPV P NTG++AFQ    T  GFRV+ TG  LE++  F VVKKLKL+G P +I K TAFI GMFNS+LEVAKF+GA++RTVSGIRG++KK+ +G   G  RATFEDKILKSD++FCR WVPVE  +++NPVTSLL K      M+ T  +R+A    VPV KDSLYKPI+RT RKF  L++P+KLQA LPFASKP +  K+ K+ YLS RAVV+EP E++KV+ MQ +  +++++IA RK    +R   + ++ A+    FD V R+EK+++YRAQGK+
Sbjct:  635 NPENPIIVGGLPNGEQNLGLVRMRFKKHRWHSKILKTNDPLVFSIGWRRFQSLPIYSVEDQNERHRYLKYTPEHMHCCATIYGPVTPPNTGVIAFQRLSSTFDGFRVSGTGVVLEVNHTFHVVKKLKLIGMPSEIHKHTAFIKGMFNSELEVAKFQGASIRTVSGIRGRVKKAIQG-TKGDFRATFEDKILKSDIVFCRTWVPVEPKRFYNPVTSLLSKEEAVSLMKTTFDIRKAEKIKVPVKKDSLYKPIQRTERKFAALNIPRKLQANLPFASKPSVDKKKSKQSYLSKRAVVLEPDEKKKVAFMQQVKVVKRDRIATRKSQQSQRIALSLKRKAREEAKFDSVHREEKRQRYRAQGKQ 994
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15047.3367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2C7_9PHAE2.960e-18989.44Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3XSS7_HETAK5.310e-14361.10Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835YHK8_9STRA1.640e-14263.64Ribosome biogenesis protein BMS1 n=1 Tax=Tribonema... [more]
A0A7S0Y850_9STRA9.360e-13858.29Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2WQ77_9STRA1.650e-13358.22Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1GAA5_9STRA3.450e-13357.78Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
B7FPQ2_PHATC2.670e-13258.84Ribosome biogenesis protein BMS1 n=4 Tax=Phaeodact... [more]
A0A2P4X1F4_9STRA4.100e-13258.74DUF663 domain-containing protein n=1 Tax=Phytophth... [more]
A0A448Z3P6_9STRA2.110e-13058.01Bms1-type G domain-containing protein n=1 Tax=Pseu... [more]
A0A024FX96_9STRA1.220e-12957.62Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15047contigH-elongata_contig15047:150..7873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.1
Seed ortholog evalue8.7e-111
Seed eggNOG ortholog2850.Phatr42831
Preferred nameBMS1
KEGG koko:K14569,ko:K15009
KEGG Pathwayko03008,ko04724,map03008,map04724
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0001959,GO:0001960,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009605,GO:0009607,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0016032,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018995,GO:0019001,GO:0019048,GO:0019049,GO:0019054,GO:0019056,GO:0019057,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019785,GO:0020012,GO:0022613,GO:0023051,GO:0023057,GO:0030430,GO:0030490,GO:0030515,GO:0030682,GO:0030683,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034248,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0035821,GO:0036094,GO:0039502,GO:0039503,GO:0039506,GO:0039507,GO:0039519,GO:0039520,GO:0039579,GO:0039604,GO:0039606,GO:0039611,GO:0039644,GO:0039648,GO:0039653,GO:0039656,GO:0039657,GO:0039690,GO:0039694,GO:0042025,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043656,GO:0043657,GO:0044003,GO:0044068,GO:0044073,GO:0044085,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044359,GO:0044362,GO:0044403,GO:0044413,GO:0044414,GO:0044415,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044501,GO:0045088,GO:0045824,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050690,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051817,GO:0051832,GO:0051833,GO:0051834,GO:0052026,GO:0052027,GO:0052029,GO:0052031,GO:0052037,GO:0052055,GO:0052056,GO:0052167,GO:0052170,GO:0052173,GO:0052200,GO:0052204,GO:0052205,GO:0052250,GO:0052255,GO:0052261,GO:0052306,GO:0052309,GO:0052312,GO:0052493,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0075109,GO:0075111,GO:0075112,GO:0075114,GO:0075136,GO:0075528,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.U3 snoRNA binding
EggNOG OGs2XAZU@2836,COG5192@1,KOG1951@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons8
Model size1520
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15047.3367.1prot_H-elongata_contig15047.3367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15047 183..7514 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.7501352-UTR-H-elongata_contig15047:149..1821622929890.7501352-UTR-H-elongata_contig15047:149..182Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15047 150..182 +
1691679197.0029054-UTR-H-elongata_contig15047:149..1821691679197.0029054-UTR-H-elongata_contig15047:149..182Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15047 150..182 +
1622929890.8874762-UTR-H-elongata_contig15047:7514..78731622929890.8874762-UTR-H-elongata_contig15047:7514..7873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15047 7515..7873 +
1691679197.1010706-UTR-H-elongata_contig15047:7514..78731691679197.1010706-UTR-H-elongata_contig15047:7514..7873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15047 7515..7873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.7679946-CDS-H-elongata_contig15047:182..3461622929890.7679946-CDS-H-elongata_contig15047:182..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 183..346 +
1691679197.015752-CDS-H-elongata_contig15047:182..3461691679197.015752-CDS-H-elongata_contig15047:182..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 183..346 +
1622929890.7828023-CDS-H-elongata_contig15047:1360..14731622929890.7828023-CDS-H-elongata_contig15047:1360..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 1361..1473 +
1691679197.0251925-CDS-H-elongata_contig15047:1360..14731691679197.0251925-CDS-H-elongata_contig15047:1360..1473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 1361..1473 +
1622929890.7978723-CDS-H-elongata_contig15047:1915..20581622929890.7978723-CDS-H-elongata_contig15047:1915..2058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 1916..2058 +
1691679197.0347679-CDS-H-elongata_contig15047:1915..20581691679197.0347679-CDS-H-elongata_contig15047:1915..2058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 1916..2058 +
1622929890.8154595-CDS-H-elongata_contig15047:4305..44751622929890.8154595-CDS-H-elongata_contig15047:4305..4475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 4306..4475 +
1691679197.044304-CDS-H-elongata_contig15047:4305..44751691679197.044304-CDS-H-elongata_contig15047:4305..4475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 4306..4475 +
1622929890.8310032-CDS-H-elongata_contig15047:5403..55121622929890.8310032-CDS-H-elongata_contig15047:5403..5512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 5404..5512 +
1691679197.0556848-CDS-H-elongata_contig15047:5403..55121691679197.0556848-CDS-H-elongata_contig15047:5403..5512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 5404..5512 +
1622929890.8449726-CDS-H-elongata_contig15047:5904..60471622929890.8449726-CDS-H-elongata_contig15047:5904..6047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 5905..6047 +
1691679197.065576-CDS-H-elongata_contig15047:5904..60471691679197.065576-CDS-H-elongata_contig15047:5904..6047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 5905..6047 +
1622929890.861023-CDS-H-elongata_contig15047:6763..68781622929890.861023-CDS-H-elongata_contig15047:6763..6878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 6764..6878 +
1691679197.077043-CDS-H-elongata_contig15047:6763..68781691679197.077043-CDS-H-elongata_contig15047:6763..6878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 6764..6878 +
1622929890.8731656-CDS-H-elongata_contig15047:7343..75141622929890.8731656-CDS-H-elongata_contig15047:7343..7514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 7344..7514 +
1691679197.0930824-CDS-H-elongata_contig15047:7343..75141691679197.0930824-CDS-H-elongata_contig15047:7343..7514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15047 7344..7514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15047.3367.1

>prot_H-elongata_contig15047.3367.1 ID=prot_H-elongata_contig15047.3367.1|Name=mRNA_H-elongata_contig15047.3367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
MAAEEGLAMVRARAKRHRWHGKTLKSNDPLVVSAGWRRFQTQPIFALEDP
NERQRYLKYTPEHMHCFSYFYGPVIPQNTGIMAFQTTGDTTTGFRVAMTG
TTLELDAKFEVVKKLKLVGYPDKIFKKTAFINGMFNSDLEVAKFEGAAVR
TVSGIRGQIKKSAKGGNPGRCRATFEDKILKSDVIFCRLWVPVEINKYFN
PVTSLLEKGGKWEGMRNTAQLRRAMGKPVPVNKDSLYKPIERTARKFNPL
SVPKKLQAQLPFASKPKLMPKRKKKGYLSTRAVVMEPAERRKVSLMQALS
TIRKEKIAIRKEAAHRRKEANTRKLAKVSEAFDGVKRDEKKRKYRAQGKE
EERQKRAREGGGGRGRKKRGGGDDD*
back to top

mRNA from alignment at H-elongata_contig15047:150..7873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15047.3367.1 ID=mRNA_H-elongata_contig15047.3367.1|Name=mRNA_H-elongata_contig15047.3367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7724bp|location=Sequence derived from alignment at H-elongata_contig15047:150..7873+ (Himanthalia elongata Himel1 dioecious)
AGGCCGGAAAGCCCAGTGATCGTCGGGGGTCTGATGGCGGCGGAGGAAGG
CCTGGCAATGGTCCGCGCACGCGCCAAGCGGCATCGGTGGCACGGAAAAA
CGCTTAAGAGCAACGATCCGCTCGTGGTGTCCGCCGGCTGGAGGCGCTTC
CAGACGCAGCCCATCTTTGCTCTGGAAGACCCAAACGAGAGGCAGAGGTA
TCCGTTACCTATTTGTTTTTGTTTCGTTCCGTTTGATCATCCTCTATCTA
AAATATACTATAGGTTTTATAATGGCGATATTGTTTTTCTATTATACCGG
CATGTATTTATTATTTCTTCCATAATTTAGTTATTATTGCCGTTTTAATT
ATTTAGTTCTTCTGTATTAATAGAAAAATAATATATGAGTTGTAGGTTTT
AACTTCTATTGATGATACTCTACTAAATAGTAATGCAGTGTTTGCGATTT
TTAGTTTTATATTATGCGAAGTATTCCAAATTTGACTAGGCTTGATCGCG
ACGGCAGTCACTATAGTAGTAGTAGTACTACTAGTAGTAGTAGTAGCTTC
CAAAATCGAAAATCGCACACAAGAGGTTTGTCCAAATCATGTTAATACAT
CCTCTTAATCATCTTAATCATCTTAATCTATCATACGAGTATGATCTTTC
CGAGGAAATAATGAAACATACAGTAATAGAAAAACAAATAGATATCCTTG
AAAACTCAATTTTCTAGTATGTTTCATTATCTCCCTTGATGCACAATGGT
TCCTTCCGAGAATATATATACTAGAAACACGATTATATTTCCTTGAAAAT
CCAATTTTCTACTATATTTCATTATTTCGATCAATGCACAATGGTTTCTT
CCGAGAAGATAATGAAATATTCTCGAAAAATGATGATATTTACTTGAAAA
CCCAATTTTCGAGTATATACTTCATTATCTCGCTTAACCCGACACACATC
CTATTGCATCCTGTTCAGGTAACCCCATGGACCAATTATTATGCGCCTCC
TGTTTTCCCACACTCACTATTAGTACTATTGGCAGAGTGGAAATGTGCGA
TGCAGCATACTAGAGACAGTATCGATTGTCGTTCACGATAAAATCACACT
TTAGTATAATATATGAGATATAAAGCCTGTTTCGCGAAACAGTGGACCGA
GGTACATTATTCTGAATCTTCTCCTTAGTCCTACTGCTGTGCTTGATGAC
ACATGGCGCAGGTATCTCAAGTACACCCCGGAGCACATGCACTGCTTCAG
CTACTTTTATGGTCCGGTGATTCCTCAGAACACGGGCATCATGGCCTTCC
AGACCACGGGGGACACCACGACGGGTACGGTAGACTGCTGGGTTGATTTG
ATAACTATAATTAGTTGATTGAATCATTGATTCTCGTTTTTAATATTTTG
GTTGATCAATTCACGTTTTGAATATACTGGTTGATTTGTTGACGGTTTGA
ATATACTGGTTGATTTGTGGACGCCTCACAGTCTTGTCCTTGCAGTACTA
AAAGCAGCCCTTGATGTGTCAGGTAGTAGTGGGACATAGACGACCTATCC
ATGTGACGGTATCAATGGTATCAACCCCCACCCCCCTCCCAATATCCCTA
ACACCAGCAGTATGGCAGTAATATAGGGTATAGTAATATGATTTGGAAAT
GGAATAGCCAATTCAGTCACTGTGCTGAAGAAGCGCTTGTCTCTATTCAT
GCTACTATAATACCGCACGTTTTCAATTATGTTACCGATTACCAATACCA
CCGTTGACCGGACAAGGCTTCCGCGTGGCGATGACGGGGACCACCCTCGA
GCTGGACGCGAAGTTCGAAGTGGTGAAGAAGCTGAAGCTGGTGGGCTACC
CGGACAAGATCTTCAAGAAGACGGCGTTCATCAACGGGATGTTCAACTCC
GACCTCGAGGTCGGTCAGCCAGTCGGTCACCATGTTTTAGGACTAATGAA
AGTCGAGCACCACGCTTTAGGACTGCTGCTAACTCTACTTATGTTCATGT
TGGGCGATGCATCTGTCTGTTGATGTCCTGTGCAGCAGTATCAGTATCGT
AAAAAAAGTAAAAGAATGCACGCCTTGGTGGCAGCCCCTCGGATCTGCGT
CTGGCTCTTTTTCGCTTGGCCTCTGCGATATAGGGAGGGGAGGGGGGGGA
GTTAATCCCCTATATATTCGAGACATTTTTTGTCGTCATCTTATGTTACA
TACTATATATAGGCATATATTATGTGTCCGTTCTGCTCGAGAAACCGTTG
ATGCTTTACCTTGATATGACTCAGATATATGATGTGGCATGACTCTAAAG
ATAAGCACACATGCGTTTTGGTGAGATATTATTCGAGTTGCAGTACTGCA
CTACTGTACCTTATTTTTTCTACTTAAAAACATCTGAACTTATTCAAACC
CTTTAAATATCCACACCTGTAGTGTACTATTAAATACTATCGGTCAAGAT
CCCTCAGTAGTATCCAAGTGTCTGAATGTGGATGGATGGTGTGGCACACG
TCTGTTCGAGCAGGGCCTCTGGATGTTTTGTATATTCTGGCCCACATATC
TTGGGGCAGTCTGGCTTCTGGATCCCGATCAACCAGACCGCCAGTTATCT
ATTTGATATGGATGATCCGGACCAGGCATTTGATTGGTTTGGATCGTCCT
GACCAGGCATTTGATTATTTCGGATAGTTCGGACCAGGCACTTGATTGGT
CTGCGTATTTCTGAGTAGGCTCGTAGATAGGCCAGATCACCCAGACCATC
TAGGCGTTGTGGGCAGGTCATAGTGATAAATCAGACGCCGGAAGTTGAGG
TCTATATTTCTGGATGGCGCAGAAGCGTGGACGATCTGTTTGATCCGCAT
CGGGGTCTTTTCATGATCAAACAGATGTCGTGATGTCGTCGTCGTTTCGA
GATACTCGTAGTTTAGGCTAGATACTATCCAAAACATCTTGACTAATGAT
TCTTTGAAATACCAGTGTGGCCCAGAGCAGACTATCTAAAAACTGCTTCA
CCAAAAGACGCAAAAGCCCTTTCTTGTTTTGTAGCTTAATGGTTGTCCGC
GAACGAACTTTTTGTGGTTTTCGTAATGTGATGGCATTGCCGGTACTTGT
CGTTACGTGGGGCGACACATTTCAATATCAAGAGAGGAGGGTGTTATGAT
ATTGAGTTTACCAAGGAACTATAGGGAAAACGGGTGTAATCACCTTTTAG
CGCTATTATCCCAGCTGGACCAGCGGTAATCCTTTTCCCTGGCATTGGGG
TTTCATTGTAGAAGAAAGCGGAGGAGGGGAGGGGGGGGCAGATATTCCAG
GCGCGGCAGGGAGGGAAAACCGAATGTGTTGGACATCCGGGGGAACCCTG
CCCCCTCTCCCCCAATAATCAAGCATCTAAGTCGTGGAAAACTTGAATAC
GGCCCCGACCCTGATGTCCTCTCCCAACACACACACTCATTTCTCTGATG
CATTACAGACTACTCGGGAAGTGGTATATTTACTTTTGACGAATAAATGT
TTTTTCACAGAAGATACTTTTTGGTGTTATATTTTCCCAACACGGCATGG
TTTGACAAAGAAAATTCGGAGGGGAGGGAAAGGGGCGGGAGTCTATATAC
CTGCGAGGCTTTTTTATCTGTTCTATACTCTGTAGTATACGGTACCAGCC
CCGTTCTGACGTCAGCGGGAGAGGTTCAGGAGTTGCGCCTACTTTGGCCT
TTTTTGTCGGGGGAAGGAGGATAGTATTATATCCGCCCTCATTTCAGTCG
ATTCTTCGGCATTCGAGAGCAGCGACGCAAGAATATATAATCCTCTGTTT
TTTGTCGAAAAATCTAGTCGGGATTGTGTTCCGCCAAAACCAGAGTGTAA
TGTTTGAGACGAGAGTTTTCTCTTTTAACTACTGTCCATGACATATAGTT
TTGATTATTTATTTTTTATCCATGAGTTTTTACTAATTTTTCACTTATAA
TATACTAGAATCGTTGTCGTCAAGAAAAACGGGGGGGGAAGCATGTACGG
TATGTATATGTGTGTATGTGTGTATTGTTACCGCTTCTTTCTTCACCCGC
CACTCTTCCTTCTTTTTTCTCTAGGTGGGGTGTAGTGGCCCTGCGTCCAT
CTTTTTCGTTTTCGTTTTTTTTCTCACACCGTTGCCGTTGCCGTTGCCGT
CAAAAGGTGGCCAAGTTCGAGGGGGCTGCGGTCCGGACGGTTAGCGGCAT
CAGAGGACAGATCAAGAAGTCCGCCAAGGGGGGCAACCCCGGCAGGTGTC
GGGCAACCTTCGAGGACAAGATCCTGAAGTCCGACGTCATCTTCTGCAGG
CTCTGGGTCCCGGTTGAGATCAACAAGTGCGTTGTGTCTTGGTATTATTG
TAGAAGAGACAGAGCGGGGGTGGGGGGGGGGGCACCTCGTGATTCCGTCG
AGTGCTATACATGTTTTCTGTGGCACGTTAGTATTAAGATATAAGAGATG
ACGGGGGGTCTCACGGGAGTTAGGGTCAGTTGTAGGAGTTCAAATGCCAG
ATTGTATCATTTGTTTCTTAATTTAAGTTTATCCTTTTTCTAATATTTCT
CATATATATATATATAAATTATTGTGACGATTCGGAAGGGGTGTCATTTG
TTTGGTGAGCGTGATGATTAATGGATTGATTGGGCGTGGGACATGCTTCA
TATTTGAAGATTCCGTCGCGCGAGCAATGGTTTTGAAGATCCGTGTTTTG
TCCAGATTTTTCTTTCGCGTTTCGGCAGGTAACCAAAAGAGAGTAGAGAC
TAGATTGTTAGAATGTTGGAGTGTGTGTTCTTTTTTGTTACTAGAAGAAT
GGAGAATTGTTTTTTTACCATCGATAGGCACAGTTATTTCGGAGATAGAT
ACGATAGATACGCACCACACTACTGTATAAAATAGGCGCATTGATGGTTT
GATGGTTCCGGATGGTTCCGGATGGTAGTACTATTAACAGTACACTATAA
TAGTTGCGATACTAAAAATTATTCCATTCACGTCCGCGTTCACCACTAAC
AGGGAGCTATTTATTCCCAATGCGGAAGCCGACGCGAAATATCTCGGCCA
GATGTCGTGGATCAGCAAAACGCCGTCTGCGCAATTCCGTCGCCAGTGTC
ACTCTCTCCGTGTCCCCGTACCCCTTTTCATCTCCCCTCTCCCGAGGATG
CGTGGTCAATGGTAATGGTCTAGCATGGTTATGGTCTAACAGCTAAGGCA
TGCAAAACCTGAGAACCCCCCCCCCCCGCCCGCCCCGCTTTATCTCCACC
CCAGGTATTTTAATCCCGTTACCTCCCTCCTCGAGAAGGGCGGCAAGTGG
GAGGGGATGCGCAACACGGCTCAGCTGAGGAGAGCTATGGGCAAGCCCGT
CCCAGTCAACAAGGTACGGTTCAAAGTTAAAACAAAGGCAGAAATACCAT
AACCACACTCATAGTAGGGCATGTCTCATTGTCTCCAATATTAAGCCCCC
CTCCCCATTCTCCTTACACCCGCGCGCGCAGCTGCGAGGTAGTTAGCCAT
GATGATCCAACCGGCCTGGCGACGGACTATTGACTGGTTTTCGTGGAATG
GACTTTCGAATAGGGCCTGCAAGCGCGCGTGGGATCGATATCGACGTGTA
CCCTTTACACGGCGTGTCGGAGCTCCAAACGTTTCATCTTCGATTTTTCT
CCGCCCCTTCCCCTCACCAAACCCTAAACCCTCCGTTCCCCCCACCCAAA
TTATATTCCCTCCATTTCTCCGCACTCCTGATGATGGGCTTTCGCCGCCT
TTCAGGACTCGCTGTACAAGCCGATCGAAAGGACTGCCCGGAAGTTTAAC
CCACTTTCGGTGCCCAAGAAGCTGCAGGCCCAGCTTCCTTTCGCTTCTAA
GCCCAAGCTGATGCCTAAGCGAAAGAAGAAGGGTTACCTTTCCACGCGGT
GAGAGCTCGGAGCTTGGCACTTGGCGCCGCCTTACCAGTCAGCCTGCCCG
CCCGCCGTCGTCGGGTGGCGCGTGTTTGTGCATGTGTGACGTCATCTACC
GTGCAGTGCGATGGTGTACGTCTCTCTGTCCGAAGGCAGCAACCGTCGTG
TGTCTCGTGTCTCGTTTCGTGCATGTTATATGCATTGCATGTTTTGTATA
TAATTTGTTTATGTTTTGTGTGTATTTCATGGATGATGTGCTTTTTGTTC
TGCGTTACAACGTGGATCATATATATATATTTTGCGAGTTCGATTCTCAG
TAGTACCACTAGGCACCATTTTTATCCAACTTTTTTTTCTCTGAAAATCG
TGAGAATTAGGACGCGAGTTTTGAGAAAACGTATGTCCAAAGATTGGTTT
ACGGAGGGAAGCGCTGAAACAGAAAAAAATAGGATATAGATTATACAGTA
TCCTCATATCCCCCCTCCACCCCCCCTCCCCATCTCGATGTGACGTCATT
GATTGATCACACGCGTCTGGAGTACGGTTAGTGGTGAGGTGTGGTCTGGT
CTGGTCTGATTAGTTAATCCATCTATATATCTTTCTGTCTGTTTGACGTG
CCACCGTTAATCAACGCACTGACGGAATGGACTTGGTTAATCAACTATTT
TAACTTTTACGAACCACCGTGTTCTCACGATCGGATCGCGTGATCGTGTT
CGCGTGTTTGGAAGGGCGGTTGTGATGGAACCGGCGGAGAGGCGCAAGGT
ATCGCTCATGCAGGCACTGTCGACAATCAGGAAGGAGAAGATTGCAATCC
GCAAAGAGGCGGCCCATAGGCGGAAAGAGGTGGGCTAGGCGCTGTCGTCA
ATAGCGATACGAGTATAGTAAACGAAGGGGACGAAGGTCTACTCTTATAC
CAGTACATCAGTTCTTGAAGTTCTCTGAAGGACGCGTGATATACTTTAAG
ATGGCCCGCCCTTCAACGACGAGGCCTAATGGGATTATCGTGGGGGGTAG
GATAGGGGGGATCACTCAATTCCAAAACTTTTCTGGTGTTGGTGGGTAAT
GTTCGTGCGAAGATTCGTGCGAAGATTGGTCGAGTTGCAAGCCTCGGGGA
CAGGCTGTTGCAGTGAATCTGGCTTTAGCGCTTGTATTTCTCACTGTGAA
GATCTTCAAGTAGTTATATCGGAGAATGATGGGCATACTTGTAAGAGTTA
AACATCCCACGGGAGAGACTCTGTCATATCATCTCACTTCTTGTACGCCC
CCCCCCTTCCCCTCCTCTTACCCCTCCCACTCTGCCGCGCGAAGGCAAAC
ACGCGTAAGCTGGCGAAGGTTTCCGAGGCGTTTGACGGCGTGAAGAGGGA
CGAAAAGAAGCGGAAGTACCGTGCCCAAGGCAAGGAGGAAGAGCGGCAAA
AGAGGGCTAGAGAGGGCGGAGGTGGTAGGGGCCGGAAAAAGCGTGGGGGT
GGCGATGATGATTGATGGATCGATGAGGTGTCGCTCTTACGGGGCCAGTC
GAGCTCCTGACGATTCTGTTGTTTGGAATTTTGCTGAGGTGGTAGTTTAT
ACACTAATAATACCATACTGTACCGGAGATGATTACTGTATGGTATTAAT
AGTATATAAATATATCGTGGCATAGAGCATCGCCCAGCTGCTGGTGGGTT
TCGGTACTCTTGCTATGCTTGTTTCTGCGGTTACCTTTTCTTCCATGTTT
CCACGGCGTGTCGGGCCGGCCCACGCTCTCTCTGAAAACTCTTTTAAACC
AACCAATCATCCTCTCTCTCTTTTTCATAGTCGTAGCCGCAAGCTTAGCT
TTAATCGATATTGTGTCACGAGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15047:150..7873+

>mRNA_H-elongata_contig15047.3367.1 ID=mRNA_H-elongata_contig15047.3367.1|Name=mRNA_H-elongata_contig15047.3367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig15047:150..7873+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCGGAGGAAGGCCTGGCAATGGTCCGCGCACGCGCCAAGCGGCA
TCGGTGGCACGGAAAAACGCTTAAGAGCAACGATCCGCTCGTGGTGTCCG
CCGGCTGGAGGCGCTTCCAGACGCAGCCCATCTTTGCTCTGGAAGACCCA
AACGAGAGGCAGAGATGGCGGCGGAGGAAGGCCTGGCAATGGTCCGCGCA
CGCGCCAAGCGGCATCGGTGGCACGGAAAAACGCTTAAGAGCAACGATCC
GCTCGTGGTGTCCGCCGGCTGGAGGCGCTTCCAGACGCAGCCCATCTTTG
CTCTGGAAGACCCAAACGAGAGGCAGAGGTATCTCAAGTACACCCCGGAG
CACATGCACTGCTTCAGCTACTTTTATGGTCCGGTGATTCCTCAGAACAC
GGGCATCATGGCCTTCCAGACCACGGGGGACACCACGACGGGTATCTCAA
GTACACCCCGGAGCACATGCACTGCTTCAGCTACTTTTATGGTCCGGTGA
TTCCTCAGAACACGGGCATCATGGCCTTCCAGACCACGGGGGACACCACG
ACGGGCTTCCGCGTGGCGATGACGGGGACCACCCTCGAGCTGGACGCGAA
GTTCGAAGTGGTGAAGAAGCTGAAGCTGGTGGGCTACCCGGACAAGATCT
TCAAGAAGACGGCGTTCATCAACGGGATGTTCAACTCCGACCTCGAGGCT
TCCGCGTGGCGATGACGGGGACCACCCTCGAGCTGGACGCGAAGTTCGAA
GTGGTGAAGAAGCTGAAGCTGGTGGGCTACCCGGACAAGATCTTCAAGAA
GACGGCGTTCATCAACGGGATGTTCAACTCCGACCTCGAGGTGGCCAAGT
TCGAGGGGGCTGCGGTCCGGACGGTTAGCGGCATCAGAGGACAGATCAAG
AAGTCCGCCAAGGGGGGCAACCCCGGCAGGTGTCGGGCAACCTTCGAGGA
CAAGATCCTGAAGTCCGACGTCATCTTCTGCAGGCTCTGGGTCCCGGTTG
AGATCAACAAGTGGCCAAGTTCGAGGGGGCTGCGGTCCGGACGGTTAGCG
GCATCAGAGGACAGATCAAGAAGTCCGCCAAGGGGGGCAACCCCGGCAGG
TGTCGGGCAACCTTCGAGGACAAGATCCTGAAGTCCGACGTCATCTTCTG
CAGGCTCTGGGTCCCGGTTGAGATCAACAAGTATTTTAATCCCGTTACCT
CCCTCCTCGAGAAGGGCGGCAAGTGGGAGGGGATGCGCAACACGGCTCAG
CTGAGGAGAGCTATGGGCAAGCCCGTCCCAGTCAACAAGGTATTTTAATC
CCGTTACCTCCCTCCTCGAGAAGGGCGGCAAGTGGGAGGGGATGCGCAAC
ACGGCTCAGCTGAGGAGAGCTATGGGCAAGCCCGTCCCAGTCAACAAGGA
CTCGCTGTACAAGCCGATCGAAAGGACTGCCCGGAAGTTTAACCCACTTT
CGGTGCCCAAGAAGCTGCAGGCCCAGCTTCCTTTCGCTTCTAAGCCCAAG
CTGATGCCTAAGCGAAAGAAGAAGGGTTACCTTTCCACGCGGACTCGCTG
TACAAGCCGATCGAAAGGACTGCCCGGAAGTTTAACCCACTTTCGGTGCC
CAAGAAGCTGCAGGCCCAGCTTCCTTTCGCTTCTAAGCCCAAGCTGATGC
CTAAGCGAAAGAAGAAGGGTTACCTTTCCACGCGGGCGGTTGTGATGGAA
CCGGCGGAGAGGCGCAAGGTATCGCTCATGCAGGCACTGTCGACAATCAG
GAAGGAGAAGATTGCAATCCGCAAAGAGGCGGCCCATAGGCGGAAAGAGG
GCGGTTGTGATGGAACCGGCGGAGAGGCGCAAGGTATCGCTCATGCAGGC
ACTGTCGACAATCAGGAAGGAGAAGATTGCAATCCGCAAAGAGGCGGCCC
ATAGGCGGAAAGAGGCAAACACGCGTAAGCTGGCGAAGGTTTCCGAGGCG
TTTGACGGCGTGAAGAGGGACGAAAAGAAGCGGAAGTACCGTGCCCAAGG
CAAGGAGGAAGAGCGGCAAAAGAGGGCTAGAGAGGGCGGAGGTGGTAGGG
GCCGGAAAAAGCGTGGGGGTGGCGATGATGATTGAGCAAACACGCGTAAG
CTGGCGAAGGTTTCCGAGGCGTTTGACGGCGTGAAGAGGGACGAAAAGAA
GCGGAAGTACCGTGCCCAAGGCAAGGAGGAAGAGCGGCAAAAGAGGGCTA
GAGAGGGCGGAGGTGGTAGGGGCCGGAAAAAGCGTGGGGGTGGCGATGAT
GATTGA
back to top