mRNA_H-elongata_contig150235.3359.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150235.3359.1
Unique NamemRNA_H-elongata_contig150235.3359.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150235.3359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150235contigH-elongata_contig150235:385..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929889.8745792-CDS-H-elongata_contig150235:384..9991622929889.8745792-CDS-H-elongata_contig150235:384..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150235 385..999 +
1691679196.8423295-CDS-H-elongata_contig150235:384..9991691679196.8423295-CDS-H-elongata_contig150235:384..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150235 385..999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150235.3359.1prot_H-elongata_contig150235.3359.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150235 385..999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150235.3359.1

>prot_H-elongata_contig150235.3359.1 ID=prot_H-elongata_contig150235.3359.1|Name=mRNA_H-elongata_contig150235.3359.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
PGQPRGRREGEEDYTSQVIVKVTYFLSDHNMFSEREVTSWRLRWRLRETI
RVRELAATHRLGQIRRLLIQEELKAFRREFGFEYLDTAAAMDARRSNPKN
FSYADYFNPRRPHTPDEFSLEIKVDIEILRMEVTLSQPAPSPCDELLQCA
VLEMGSKEPVSMRSELPLEEEIFFSLKENFLDSNPTSPKQECLLLHQPHV
EVVDE
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mRNA from alignment at H-elongata_contig150235:385..1001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150235.3359.1 ID=mRNA_H-elongata_contig150235.3359.1|Name=mRNA_H-elongata_contig150235.3359.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig150235:385..1001+ (Himanthalia elongata Himel1 dioecious)
CCTGGTCAACCAAGAGGTCGTCGTGAAGGCGAAGAGGACTACACGTCCCA
GGTGATTGTGAAGGTTACGTATTTTTTATCCGATCATAATATGTTCTCGG
AAAGAGAAGTGACGAGTTGGCGCCTGCGTTGGCGCCTTCGTGAAACCATA
AGAGTTCGCGAGCTTGCCGCGACGCATCGACTAGGGCAAATACGTCGCTT
ACTTATCCAAGAAGAACTAAAAGCCTTTAGAAGAGAGTTTGGCTTCGAGT
ACCTTGACACAGCAGCTGCCATGGATGCCAGACGTTCGAACCCCAAAAAC
TTCTCCTACGCCGACTACTTCAATCCAAGACGTCCACATACCCCTGACGA
GTTCAGCTTGGAGATCAAGGTGGACATTGAGATTTTAAGGATGGAAGTCA
CCCTTTCGCAACCCGCACCGTCGCCATGTGATGAATTACTGCAATGCGCC
GTGCTCGAGATGGGATCAAAAGAACCCGTCTCGATGCGATCTGAGCTGCC
ATTAGAAGAAGAAATATTTTTTTCTCTTAAGGAAAACTTTTTGGACTCAA
ACCCAACAAGCCCCAAGCAGGAGTGCCTCCTGCTTCATCAACCCCATGTC
GAGGTGGTCGACGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig150235:385..1001+

>mRNA_H-elongata_contig150235.3359.1 ID=mRNA_H-elongata_contig150235.3359.1|Name=mRNA_H-elongata_contig150235.3359.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig150235:385..1001+ (Himanthalia elongata Himel1 dioecious)
CCTGGTCAACCAAGAGGTCGTCGTGAAGGCGAAGAGGACTACACGTCCCA
GGTGATTGTGAAGGTTACGTATTTTTTATCCGATCATAATATGTTCTCGG
AAAGAGAAGTGACGAGTTGGCGCCTGCGTTGGCGCCTTCGTGAAACCATA
AGAGTTCGCGAGCTTGCCGCGACGCATCGACTAGGGCAAATACGTCGCTT
ACTTATCCAAGAAGAACTAAAAGCCTTTAGAAGAGAGTTTGGCTTCGAGT
ACCTTGACACAGCAGCTGCCATGGATGCCAGACGTTCGAACCCCAAAAAC
TTCTCCTACGCCGACTACTTCAATCCAAGACGTCCACATACCCCTGACGA
GTTCAGCTTGGAGATCAAGGTGGACATTGAGATTTTAAGGATGGAAGTCA
CCCTTTCGCAACCCGCACCGTCGCCATGTGATGAATTACTGCAATGCGCC
GTGCTCGAGATGGGATCAAAAGAACCCGTCTCGATGCGATCTGAGCTGCC
ATTAGAAGAAGAAATATTTTTTTCTCTTAAGGAAAACTTTTTGGACTCAA
ACCCAACAAGCCCCAAGCAGGAGTGCCTCCTGCTTCATCAACCCCATGTC
GAGGTGGTCGACGAACCTGGTCAACCAAGAGGTCGTCGTGAAGGCGAAGA
GGACTACACGTCCCAGGTGATTGTGAAGGTTACGTATTTTTTATCCGATC
ATAATATGTTCTCGGAAAGAGAAGTGACGAGTTGGCGCCTGCGTTGGCGC
CTTCGTGAAACCATAAGAGTTCGCGAGCTTGCCGCGACGCATCGACTAGG
GCAAATACGTCGCTTACTTATCCAAGAAGAACTAAAAGCCTTTAGAAGAG
AGTTTGGCTTCGAGTACCTTGACACAGCAGCTGCCATGGATGCCAGACGT
TCGAACCCCAAAAACTTCTCCTACGCCGACTACTTCAATCCAAGACGTCC
ACATACCCCTGACGAGTTCAGCTTGGAGATCAAGGTGGACATTGAGATTT
TAAGGATGGAAGTCACCCTTTCGCAACCCGCACCGTCGCCATGTGATGAA
TTACTGCAATGCGCCGTGCTCGAGATGGGATCAAAAGAACCCGTCTCGAT
GCGATCTGAGCTGCCATTAGAAGAAGAAATATTTTTTTCTCTTAAGGAAA
ACTTTTTGGACTCAAACCCAACAAGCCCCAAGCAGGAGTGCCTCCTGCTT
CATCAACCCCATGTCGAGGTGGTCGACGAA
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