mRNA_H-elongata_contig150033.3351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150033.3351.1
Unique NamemRNA_H-elongata_contig150033.3351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150033.3351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150033contigH-elongata_contig150033:2..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150033.3351.1prot_H-elongata_contig150033.3351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150033 84..395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.6737626-UTR-H-elongata_contig150033:1..831622929888.6737626-UTR-H-elongata_contig150033:1..83Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150033 2..83 +
1691679196.283606-UTR-H-elongata_contig150033:1..831691679196.283606-UTR-H-elongata_contig150033:1..83Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150033 2..83 +
1622929888.7147732-UTR-H-elongata_contig150033:395..6181622929888.7147732-UTR-H-elongata_contig150033:395..618Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150033 396..618 +
1691679196.2986538-UTR-H-elongata_contig150033:395..6181691679196.2986538-UTR-H-elongata_contig150033:395..618Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig150033 396..618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.6908007-CDS-H-elongata_contig150033:83..3951622929888.6908007-CDS-H-elongata_contig150033:83..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150033 84..395 +
1691679196.291301-CDS-H-elongata_contig150033:83..3951691679196.291301-CDS-H-elongata_contig150033:83..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150033 84..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150033.3351.1

>prot_H-elongata_contig150033.3351.1 ID=prot_H-elongata_contig150033.3351.1|Name=mRNA_H-elongata_contig150033.3351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MGGGGICVNIYAYIQKYVEDHSQAHATDPCSRRLVRVKSRESMPGWARTM
TEYWQPREITPLEKKRFDILSWQIFFSVLRVYIYTPRCTKMKYRCCIALW
RAF*
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mRNA from alignment at H-elongata_contig150033:2..618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150033.3351.1 ID=mRNA_H-elongata_contig150033.3351.1|Name=mRNA_H-elongata_contig150033.3351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig150033:2..618+ (Himanthalia elongata Himel1 dioecious)
AGCTCGTGAGAAATTGTGTTCCGCAATAATGAGTTCATCGGGTTATTTTC
TGTACTAAACCATAGAGAGTCTATATGGAGAGATGGGGGGGGGGGGTATA
TGTGTAAATATATATGCGTATATACAAAAATATGTGGAAGATCATTCTCA
AGCGCATGCTACTGATCCTTGTTCTCGAAGACTCGTTCGTGTAAAGTCTA
GAGAATCAATGCCGGGATGGGCCCGGACTATGACCGAATATTGGCAGCCT
CGCGAAATCACACCCTTAGAAAAAAAACGGTTTGATATACTCTCGTGGCA
AATTTTTTTTTCAGTCCTTCGTGTATATATATATACACCACGGTGCACCA
AAATGAAATATCGTTGCTGTATCGCGTTGTGGCGAGCCTTCTAGAAACCA
ACGGAAGAATTTCTTAGCTCTCTGTGCTACTTGTTCGTACTTGAAATTAG
AATTAATTCCTTCACACTCGAAACCCGACGGGGAAAACGGGGCTGTAGGT
AAAAAACTATGATTTTATTATTATTATTATTATTAATACTTTCCCCCCCT
CGCGGGCTACACTCACTCGTGATCTATATTTGGACGGCCGGCTCGTGTGC
CCGTTTTTTGTTTTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig150033:2..618+

>mRNA_H-elongata_contig150033.3351.1 ID=mRNA_H-elongata_contig150033.3351.1|Name=mRNA_H-elongata_contig150033.3351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig150033:2..618+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGGGGGGGGTATATGTGTAAATATATATGCGTATATACAAAAATA
TGTGGAAGATCATTCTCAAGCGCATGCTACTGATCCTTGTTCTCGAAGAC
TCGTTCGTGTAAAGTCTAGAGAATCAATGCCGGGATGGGCCCGGACTATG
ACCGAATATTGGCAGCCTCGCGAAATCACACCCTTAGAAAAAAAACGGTT
TGATATACTCTCGTGGCAAATTTTTTTTTCAGTCCTTCGTGTATATATAT
ATACACCACGGTGCACCAAAATGAAATATCGTTGCTGTATCGCGTTGTGG
CGAGCCTTCTAGATGGGGGGGGGGGGTATATGTGTAAATATATATGCGTA
TATACAAAAATATGTGGAAGATCATTCTCAAGCGCATGCTACTGATCCTT
GTTCTCGAAGACTCGTTCGTGTAAAGTCTAGAGAATCAATGCCGGGATGG
GCCCGGACTATGACCGAATATTGGCAGCCTCGCGAAATCACACCCTTAGA
AAAAAAACGGTTTGATATACTCTCGTGGCAAATTTTTTTTTCAGTCCTTC
GTGTATATATATATACACCACGGTGCACCAAAATGAAATATCGTTGCTGT
ATCGCGTTGTGGCGAGCCTTCTAG
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