mRNA_H-elongata_contig149816.3335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig149816.3335.1
Unique Name	mRNA_H-elongata_contig149816.3335.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.810e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECYS 156
            CF+C+E GHVR NCP N+ ++G  PK+TK  G+ K+CSVH +TTHSDEECYS
Sbjct:  100 CFECNEPGHVRRNCP-NRQRKGHMPKKTKPAGANKWCSVHNTTTHSDEECYS 150

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5KFV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.780e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECYS 156
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECYS
Sbjct:  243 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYS 293

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5K8D4_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8D4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.780e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECYS 156
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECYS
Sbjct:  362 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYS 412

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5KW99_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW99_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.180e-13
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K TK  G+ K+CSVH +TTHSDEECY
Sbjct:   77 CFECNEPGHVRRNCP-NRQREGHRAKRTKPAGATKWCSVHNTTTHSDEECY 126

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.310e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECY
Sbjct:  243 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECY 292

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.750e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECY
Sbjct:  243 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECY 292

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.630e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECY
Sbjct:  243 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECY 292

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.640e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECY
Sbjct:  198 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECY 247

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5KPR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.640e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECY
Sbjct:   25 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECY 74

[Close]

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.640e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1

Query:    1 CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEECY 153
            CF+C+E GHVR NCP N+ + G R K+TK  G+ K+CSVH +TTHSDEECY
Sbjct:  243 CFECNEPGHVRRNCP-NRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECY 292

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot

BLAST of mRNA_H-elongata_contig149816.3335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L4Y1_9PHAE	5.810e-14	63.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFV1_9PHAE	3.780e-13	63.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8D4_9PHAE	3.780e-13	63.46	Uncharacterized protein (Fragment) n=2 Tax=Ectocar...	[more]
A0A6H5KW99_9PHAE	5.180e-13	62.75	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5K7P0_9PHAE	8.310e-13	62.75	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5KMR7_9PHAE	8.750e-13	62.75	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KN28_9PHAE	9.630e-13	62.75	Uncharacterized protein (Fragment) n=3 Tax=Ectocar...	[more]
A0A6H5JVS2_9PHAE	9.640e-13	62.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPR8_9PHAE	9.640e-13	62.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJB9_9PHAE	9.640e-13	62.75	Uncharacterized protein (Fragment) n=2 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig149816	contig	H-elongata_contig149816:1197..1352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	156
Cds size	156
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929886.3809595-CDS-H-elongata_contig149816:1196..1352	1622929886.3809595-CDS-H-elongata_contig149816:1196..1352	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig149816 1197..1352 +
1691679195.6150618-CDS-H-elongata_contig149816:1196..1352	1691679195.6150618-CDS-H-elongata_contig149816:1196..1352	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig149816 1197..1352 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig149816.3335.1	prot_H-elongata_contig149816.3335.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig149816 1197..1352 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig149816:1197..1352+
coding sequence from alignment at H-elongata_contig149816:1197..1352+

protein sequence of mRNA_H-elongata_contig149816.3335.1

>prot_H-elongata_contig149816.3335.1 ID=prot_H-elongata_contig149816.3335.1|Name=mRNA_H-elongata_contig149816.3335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
CFKCHEEGHVRMNCPWNKGKRGKRPKETKSGGSGKFCSVHKSTTHSDEEC
YS

mRNA from alignment at H-elongata_contig149816:1197..1352+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig149816.3335.1 ID=mRNA_H-elongata_contig149816.3335.1|Name=mRNA_H-elongata_contig149816.3335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig149816:1197..1352+ (Himanthalia elongata Himel1 dioecious)
TGCTTCAAGTGCCACGAGGAAGGGCATGTAAGAATGAACTGTCCGTGGAA
CAAGGGAAAGCGGGGCAAAAGACCGAAAGAGACCAAGTCAGGAGGAAGCG
GGAAGTTTTGCTCAGTACACAAGAGCACTACACACAGTGACGAAGAGTGT
TACAGC

Coding sequence (CDS) from alignment at H-elongata_contig149816:1197..1352+

>mRNA_H-elongata_contig149816.3335.1 ID=mRNA_H-elongata_contig149816.3335.1|Name=mRNA_H-elongata_contig149816.3335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig149816:1197..1352+ (Himanthalia elongata Himel1 dioecious)
TGCTTCAAGTGCCACGAGGAAGGGCATGTAAGAATGAACTGTCCGTGGAA
CAAGGGAAAGCGGGGCAAAAGACCGAAAGAGACCAAGTCAGGAGGAAGCG
GGAAGTTTTGCTCAGTACACAAGAGCACTACACACAGTGACGAAGAGTGT
TACAGCTGCTTCAAGTGCCACGAGGAAGGGCATGTAAGAATGAACTGTCC
GTGGAACAAGGGAAAGCGGGGCAAAAGACCGAAAGAGACCAAGTCAGGAG
GAAGCGGGAAGTTTTGCTCAGTACACAAGAGCACTACACACAGTGACGAA
GAGTGTTACAGC