mRNA_H-elongata_contig149816.3334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig149816.3334.1
Unique Name	mRNA_H-elongata_contig149816.3334.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: D7G2T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 7.510e-28
Identity = 48/65 (73.85%), Postives = 59/65 (90.77%), Query Frame = 1

Query:   16 NYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDD 210
            NYNKVT EVIRATM EL+NTPME GQ P+ YFNQKHLLR++AE++G+T+LDR F+DIC+TGFTD+
Sbjct:   86 NYNKVTDEVIRATMEELINTPMETGQTPDVYFNQKHLLRHKAEEMGKTILDRSFRDICVTGFTDE 150

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.390e-26
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP+DYFNQKHLLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:   78 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEY 147

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BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5KY05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY05_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.440e-26
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP+DYFNQKHLLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:   76 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEHISDRRFKDICVQGFSDEY 145

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.820e-26
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP+DYFNQKHLLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:   54 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEY 123

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.190e-25
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            EL  NYNKVT EVIRATM EL+NTPME  QNP+DYFNQKHLLR++AEK+GET+ D +F D C+TGFT++Y
Sbjct:   99 ELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEY 168

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.710e-24
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP+DYFNQK+LLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:  121 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEY 190

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5KDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.540e-24
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP+DYFNQKHLLR + +K+GE + DR FKDI + GF+D+Y
Sbjct:   78 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDIRVQGFSDEY 147

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.750e-24
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP+DYFNQKHLLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:  139 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEY 208

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.850e-24
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIRA M EL N PM  G+NP++YFNQKHLLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:  121 ELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEY 190

[Close]

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.370e-23
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1

Query:    4 ELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKIGETVLDRWFKDICITGFTDDY 213
            ELC+NY++VT EVIR  M EL N PM  G+NP+DYFNQKHLLR + +K+GE + DR FKDIC+ GF+D+Y
Sbjct:   97 ELCNNYDRVTDEVIRTKMEELENNPMNLGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEY 166

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot

BLAST of mRNA_H-elongata_contig149816.3334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2T3_ECTSI	7.510e-28	73.85	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L2I7_9PHAE	5.390e-26	64.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KY05_9PHAE	7.440e-26	64.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLQ5_9PHAE	7.820e-26	64.29	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5KW66_9PHAE	1.190e-25	71.43	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KVX0_9PHAE	1.710e-24	62.86	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KDC9_9PHAE	4.540e-24	62.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L580_9PHAE	6.750e-24	64.29	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JF66_9PHAE	8.850e-24	62.86	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KT84_9PHAE	4.370e-23	62.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig149816	contig	H-elongata_contig149816:808..1020 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	213
Cds size	213
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929886.3482616-CDS-H-elongata_contig149816:807..1020	1622929886.3482616-CDS-H-elongata_contig149816:807..1020	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig149816 808..1020 +
1691679195.6053643-CDS-H-elongata_contig149816:807..1020	1691679195.6053643-CDS-H-elongata_contig149816:807..1020	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig149816 808..1020 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig149816.3334.1	prot_H-elongata_contig149816.3334.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig149816 808..1020 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig149816:808..1020+
coding sequence from alignment at H-elongata_contig149816:808..1020+

protein sequence of mRNA_H-elongata_contig149816.3334.1

>prot_H-elongata_contig149816.3334.1 ID=prot_H-elongata_contig149816.3334.1|Name=mRNA_H-elongata_contig149816.3334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MELCDNYNKVTYEVIRATMGELVNTPMEEGQNPNDYFNQKHLLRNRAEKI
GETVLDRWFKDICITGFTDDY

mRNA from alignment at H-elongata_contig149816:808..1020+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig149816.3334.1 ID=mRNA_H-elongata_contig149816.3334.1|Name=mRNA_H-elongata_contig149816.3334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig149816:808..1020+ (Himanthalia elongata Himel1 dioecious)
ATGGAACTCTGTGACAACTACAACAAAGTCACATATGAAGTCATTCGTGC
TACGATGGGCGAGCTGGTAAACACCCCAATGGAAGAGGGGCAGAACCCAA
ACGATTATTTTAATCAGAAACATTTGCTGCGCAACAGGGCCGAGAAAATA
GGAGAAACAGTTTTGGACCGCTGGTTCAAAGACATCTGCATAACGGGGTT
CACCGATGACTAC

Coding sequence (CDS) from alignment at H-elongata_contig149816:808..1020+

>mRNA_H-elongata_contig149816.3334.1 ID=mRNA_H-elongata_contig149816.3334.1|Name=mRNA_H-elongata_contig149816.3334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig149816:808..1020+ (Himanthalia elongata Himel1 dioecious)
ATGGAACTCTGTGACAACTACAACAAAGTCACATATGAAGTCATTCGTGC
TACGATGGGCGAGCTGGTAAACACCCCAATGGAAGAGGGGCAGAACCCAA
ACGATTATTTTAATCAGAAACATTTGCTGCGCAACAGGGCCGAGAAAATA
GGAGAAACAGTTTTGGACCGCTGGTTCAAAGACATCTGCATAACGGGGTT
CACCGATGACTACATGGAACTCTGTGACAACTACAACAAAGTCACATATG
AAGTCATTCGTGCTACGATGGGCGAGCTGGTAAACACCCCAATGGAAGAG
GGGCAGAACCCAAACGATTATTTTAATCAGAAACATTTGCTGCGCAACAG
GGCCGAGAAAATAGGAGAAACAGTTTTGGACCGCTGGTTCAAAGACATCT
GCATAACGGGGTTCACCGATGACTAC