mRNA_H-elongata_contig149682.3322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149682.3322.1
Unique NamemRNA_H-elongata_contig149682.3322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149682.3322.1 vs. uniprot
Match: A0A6H5L5B7_9PHAE (Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.980e-17
Identity = 55/104 (52.88%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:  391 VEGFADVQLEGVGLLLVLLGTQAYGPRPHPPPDQKHHHSSVHTGPRPAPGLDNVFLDALLREAGVNRRVGSVGEGTRNRGWGAALPRAALGWFIRRSAAPPGSA 702
            VEGF+D+QLE VGLLLVLLGTQAYGP    PP                  +DNVFLDAL                 R  GWG ALPRA LGWF+RR AAPPGSA
Sbjct:  257 VEGFSDLQLEAVGLLLVLLGTQAYGP----PPPTWGSSPGRXXXXXXXXXVDNVFLDALXXXXXXXXXXXXX----RPHGWGCALPRAVLGWFVRRPAAPPGSA 352
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BLAST of mRNA_H-elongata_contig149682.3322.1 vs. uniprot
Match: D8LKU1_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.880e-10
Identity = 47/120 (39.17%), Postives = 52/120 (43.33%), Query Frame = 1 
Query:  382 ISAVEGFADVQLEGVGLLLVLLGTQAYGPRPHPPPDQKHHHSSVHTGPRPA-------------PGLDNVFLDALLREAGVNRRVGSVGEGTRNRGWGAALPRAALGWFIRRSAAPPGSA 702
            + +VEGF+D+QLE VGLLLVLLGTQAYGP                 G  P                                          R  GWG ALPRA LGWF+RR AAPPGSA
Sbjct:  126 VLSVEGFSDLQLEAVGLLLVLLGTQAYGP------------PXXTWGSXPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPHGWGCALPRAVLGWFVRRPAAPPGSA 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149682.3322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5B7_9PHAE6.980e-1752.88Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
D8LKU1_ECTSI4.880e-1039.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149682contigH-elongata_contig149682:235..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005550.1
Exons2
Model size705
Cds size705
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.8968494-CDS-H-elongata_contig149682:234..7451622929884.8968494-CDS-H-elongata_contig149682:234..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149682 235..745 +
1691679195.054822-CDS-H-elongata_contig149682:234..7451691679195.054822-CDS-H-elongata_contig149682:234..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149682 235..745 +
1622929884.913717-CDS-H-elongata_contig149682:1244..14381622929884.913717-CDS-H-elongata_contig149682:1244..1438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149682 1245..1438 +
1691679195.0633569-CDS-H-elongata_contig149682:1244..14381691679195.0633569-CDS-H-elongata_contig149682:1244..1438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149682 1245..1438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149682.3322.1prot_H-elongata_contig149682.3322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149682 235..1438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149682.3322.1

>prot_H-elongata_contig149682.3322.1 ID=prot_H-elongata_contig149682.3322.1|Name=mRNA_H-elongata_contig149682.3322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MVANLDASQLRSQVYSRGKLKNSGHSGNGSGVHRGRAFHNGGEYRYHTAT
VTVPGANVVVTTGGGSGGGRVGGVSTIGITEGVEEAEHAVLAPSGMGRTR
VADDPIVALLAALVSLLCAAEERGRESISAVEGFADVQLEGVGLLLVLLG
TQAYGPRPHPPPDQKHHHSSVHTGPRPAPGLDNVFLDALLREAGVNRRVG
SVGEGTRNRGWGAALPRAALGWFIRRSAAPPGSAA
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mRNA from alignment at H-elongata_contig149682:235..1438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149682.3322.1 ID=mRNA_H-elongata_contig149682.3322.1|Name=mRNA_H-elongata_contig149682.3322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1204bp|location=Sequence derived from alignment at H-elongata_contig149682:235..1438+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCAAACCTCGACGCGTCGCAACTTCGCTCCCAAGTTTATTCCCG
CGGGAAGCTCAAGAACAGCGGTCATAGCGGCAACGGCAGTGGGGTGCACA
GAGGTCGCGCCTTCCACAATGGTGGAGAATACCGCTATCACACGGCGACC
GTTACAGTCCCGGGGGCGAACGTAGTCGTGACCACAGGAGGCGGCAGCGG
TGGGGGTCGGGTCGGCGGCGTCTCGACCATCGGTATTACCGAGGGAGTGG
AAGAGGCGGAGCACGCGGTGTTGGCGCCGAGCGGGATGGGGCGCACGCGC
GTCGCCGATGACCCGATCGTCGCGCTCTTGGCCGCGCTGGTGTCTCTGCT
GTGCGCGGCGGAAGAAAGAGGACGAGAAAGCATCTCGGCCGTCGAAGGGT
TTGCGGACGTGCAGTTGGAGGGGGTGGGGCTCCTGCTCGTCTTGCTGGGA
ACTCAGGCTTACGGTCCACGGCCCCACCCGCCGCCAGACCAAAAGCATCA
TCACTCAAGCGGTGGGTGCTACGTTGCCAAAACGAGGGTTGTTGCCTACA
GTCACGCAAATGTCCATGCGATACGATGTCATGAGTGCGGGTGCGGATGT
CGATCAAGGGGTAAGATCAGGGATAAACGAAGGAAGAGAAGAGAGGAAAG
TGGCGGGCCAGTAAAACACACACACATAGCAACGGTGTCCATTCCGGCGC
ACTGGTAGACCGTCCACGTCTTCGAGTCGTTAATGAAGCGAGCAGCACGA
TCGAACCTACTCGGTAAATGCCTGTACTGTACGTGTACATACGTGCAGCA
GTAGTTTAGTAAGCTACGCGAGCCACTTTTACCACCCCAAAATAAACGTG
GGCAGCTTCTTCACGGCCGTGAGTTTTTTTTACGTTTGGGTTGTCCAAGT
AAGTTTGCATTCCTTCTTTCGTGATGCTTCCAAGCTGTTGGGGTAGCCGT
CTCGCGTCCCCCCTCCCCCCTCCCATTTTTATGTGTTTGCCGTCTGTTTC
GTGTGCCGAGTTCATACAGGGCCACGTCCTGCTCCCGGCTTGGACAACGT
CTTTCTCGACGCCCTCTTGAGAGAGGCTGGGGTGAACCGGCGCGTTGGCA
GCGTCGGAGAGGGTACGCGGAATCGAGGGTGGGGTGCCGCTCTTCCCCGG
GCGGCTCTAGGCTGGTTCATTCGAAGGTCGGCGGCCCCACCAGGATCGGC
GGCG
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Coding sequence (CDS) from alignment at H-elongata_contig149682:235..1438+

>mRNA_H-elongata_contig149682.3322.1 ID=mRNA_H-elongata_contig149682.3322.1|Name=mRNA_H-elongata_contig149682.3322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig149682:235..1438+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCAAACCTCGACGCGTCGCAACTTCGCTCCCAAGTTTATTCCCG
CGGGAAGCTCAAGAACAGCGGTCATAGCGGCAACGGCAGTGGGGTGCACA
GAGGTCGCGCCTTCCACAATGGTGGAGAATACCGCTATCACACGGCGACC
GTTACAGTCCCGGGGGCGAACGTAGTCGTGACCACAGGAGGCGGCAGCGG
TGGGGGTCGGGTCGGCGGCGTCTCGACCATCGGTATTACCGAGGGAGTGG
AAGAGGCGGAGCACGCGGTGTTGGCGCCGAGCGGGATGGGGCGCACGCGC
GTCGCCGATGACCCGATCGTCGCGCTCTTGGCCGCGCTGGTGTCTCTGCT
GTGCGCGGCGGAAGAAAGAGGACGAGAAAGCATCTCGGCCGTCGAAGGGT
TTGCGGACGTGCAGTTGGAGGGGGTGGGGCTCCTGCTCGTCTTGCTGGGA
ACTCAGGCTTACGGTCCACGGCCCCACCCGCCGCCAGACCAAAAGCATCA
TCACTCAAGCGATGGTGGCAAACCTCGACGCGTCGCAACTTCGCTCCCAA
GTTTATTCCCGCGGGAAGCTCAAGAACAGCGGTCATAGCGGCAACGGCAG
TGGGGTGCACAGAGGTCGCGCCTTCCACAATGGTGGAGAATACCGCTATC
ACACGGCGACCGTTACAGTCCCGGGGGCGAACGTAGTCGTGACCACAGGA
GGCGGCAGCGGTGGGGGTCGGGTCGGCGGCGTCTCGACCATCGGTATTAC
CGAGGGAGTGGAAGAGGCGGAGCACGCGGTGTTGGCGCCGAGCGGGATGG
GGCGCACGCGCGTCGCCGATGACCCGATCGTCGCGCTCTTGGCCGCGCTG
GTGTCTCTGCTGTGCGCGGCGGAAGAAAGAGGACGAGAAAGCATCTCGGC
CGTCGAAGGGTTTGCGGACGTGCAGTTGGAGGGGGTGGGGCTCCTGCTCG
TCTTGCTGGGAACTCAGGCTTACGGTCCACGGCCCCACCCGCCGCCAGAC
CAAAAGCATCATCACTCAAGCGTTCATACAGGGCCACGTCCTGCTCCCGG
CTTGGACAACGTCTTTCTCGACGCCCTCTTGAGAGAGGCTGGGGTGAACC
GGCGCGTTGGCAGCGTCGGAGAGGGTACGCGGAATCGAGGGTGGGGTGCC
GCTCTTCCCCGGGCGGCTCTAGGCTGGTTCATTCGAAGGTCGGCGGCCCC
ACCAGGATCGGCGGCGTTCATACAGGGCCACGTCCTGCTCCCGGCTTGGA
CAACGTCTTTCTCGACGCCCTCTTGAGAGAGGCTGGGGTGAACCGGCGCG
TTGGCAGCGTCGGAGAGGGTACGCGGAATCGAGGGTGGGGTGCCGCTCTT
CCCCGGGCGGCTCTAGGCTGGTTCATTCGAAGGTCGGCGGCCCCACCAGG
ATCGGCGGCG
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