mRNA_H-elongata_contig149605.3315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149605.3315.1
Unique NamemRNA_H-elongata_contig149605.3315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.560e-18
Identity = 33/43 (76.74%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATGWSF 129
            ++KRGR+++CT+CK +GATIGCLVE+CK+SYHFPCAEATGWSF
Sbjct: 1117 EIKRGRKMNCTSCKRRGATIGCLVESCKNSYHFPCAEATGWSF 1159
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: F0Y8N5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8N5_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.590e-9
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 VKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATGWSF 129
             KRG QL C AC G+GATIGC V +C+ SYH PCA ++ W F
Sbjct:  748 AKRGAQLRCFACDGRGATIGCHVASCQRSYHAPCAVSSRWRF 789
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: A0A6F9CEF9_9TELE (PHD-type domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9CEF9_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 3.890e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATG 120
            +++RG +LSC  CK KGAT+GC VE+C+ SYH+PCA   G
Sbjct:   68 EMRRGNRLSCYRCKRKGATVGCEVESCQKSYHYPCAVQDG 107
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: UPI001BE063F4 (uncharacterized protein LOC121571586 isoform X1 n=3 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001BE063F4)

HSP 1 Score: 59.3 bits (142), Expect = 4.070e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATG 120
            +++RG +LSC  CK KGAT+GC VE+C+ SYH+PCA   G
Sbjct:   68 EMRRGNRLSCYRCKRKGATVGCEVESCQKSYHYPCAVQDG 107
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: UPI00145BDF63 (uncharacterized protein phf11 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145BDF63)

HSP 1 Score: 57.8 bits (138), Expect = 1.370e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCA 108
            + +RGR+LSC+ CK KGAT+GC  + CK SYH+PCA
Sbjct:   63 EQQRGRRLSCSKCKKKGATVGCETKACKKSYHYPCA 98
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: UPI0018E1E312 (cyclin-dependent kinase 12 isoform X1 n=5 Tax=Cyprinodon TaxID=28741 RepID=UPI0018E1E312)

HSP 1 Score: 57.0 bits (136), Expect = 2.660e-8
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATG 120
            +VKRGR+L+C+ CK KGAT GC V  CK ++H+PCA   G
Sbjct:   65 EVKRGRKLTCSGCKKKGATAGCEVGRCKRTFHYPCAVEGG 104
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: A0A3Q2ZIF1_KRYMA (PHD finger protein 11 n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q2ZIF1_KRYMA)

HSP 1 Score: 57.0 bits (136), Expect = 2.660e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCA 108
            +VKRGR+LSC+ C+ +GAT GC V  CK S+H+PCA
Sbjct:   65 EVKRGRKLSCSGCRKRGATSGCEVRRCKKSFHYPCA 100
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: UPI0005AC889A (histone-lysine N-methyltransferase trithorax n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AC889A)

HSP 1 Score: 56.2 bits (134), Expect = 4.960e-8
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    4 VKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATGWSF 129
            + RGRQ+ C+ C  KGA+IGC  + C ++YHFPCA   G  F
Sbjct: 1369 ISRGRQIRCSECGKKGASIGCCAKNCSTTYHFPCARNAGLGF 1410
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: A0A0C9QYN4_9HYME (Trx_1 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9QYN4_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 4.960e-8
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    4 VKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATGWSF 129
            + RGRQ+ C+ C  KGA+IGC  + C ++YHFPCA   G  F
Sbjct: 1369 ISRGRQIRCSECGKKGASIGCCAKNCSTTYHFPCARNAGLGF 1410
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BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Match: A0A2K3DMH1_CHLRE (PHD-type domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DMH1_CHLRE)

HSP 1 Score: 56.2 bits (134), Expect = 4.960e-8
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 VKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATGWSF 129
            ++RGRQL C  C  +GAT+GC VE C +SYH  CA+A+G  F
Sbjct:   84 IRRGRQLRCGLCGERGATLGCRVERCNTSYHLHCAKASGCFF 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149605.3315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE4.560e-1876.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y8N5_AURAN1.590e-959.52Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6F9CEF9_9TELE3.890e-957.50PHD-type domain-containing protein n=1 Tax=Coregon... [more]
UPI001BE063F44.070e-957.50uncharacterized protein LOC121571586 isoform X1 n=... [more]
UPI00145BDF631.370e-861.11uncharacterized protein phf11 n=1 Tax=Periophthalm... [more]
UPI0018E1E3122.660e-857.50cyclin-dependent kinase 12 isoform X1 n=5 Tax=Cypr... [more]
A0A3Q2ZIF1_KRYMA2.660e-861.11PHD finger protein 11 n=1 Tax=Kryptolebias marmora... [more]
UPI0005AC889A4.960e-850.00histone-lysine N-methyltransferase trithorax n=1 T... [more]
A0A0C9QYN4_9HYME4.960e-850.00Trx_1 protein (Fragment) n=1 Tax=Fopius arisanus T... [more]
A0A2K3DMH1_CHLRE4.960e-854.76PHD-type domain-containing protein n=2 Tax=Chlamyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149605contigH-elongata_contig149605:448..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog42099.EPrPV00000015432
Preferred nameTBRG1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11424,ko:K11654,ko:K14436,ko:K14437
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
EggNOG free text desc.Chromodomain-helicase-DNA-binding protein. Source PGD
EggNOG OGs1MDI9@121069,COG0553@1,COG2940@1,KOG0384@2759,KOG1081@2759,KOG4443@2759
EC2.1.1.43,3.6.4.12
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.4222457-CDS-H-elongata_contig149605:447..5761622929884.4222457-CDS-H-elongata_contig149605:447..576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149605 448..576 +
1691679194.8447084-CDS-H-elongata_contig149605:447..5761691679194.8447084-CDS-H-elongata_contig149605:447..576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149605 448..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149605.3315.1prot_H-elongata_contig149605.3315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149605 448..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149605.3315.1

>prot_H-elongata_contig149605.3315.1 ID=prot_H-elongata_contig149605.3315.1|Name=mRNA_H-elongata_contig149605.3315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
QVKRGRQLSCTACKGKGATIGCLVETCKSSYHFPCAEATGWSF
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mRNA from alignment at H-elongata_contig149605:448..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149605.3315.1 ID=mRNA_H-elongata_contig149605.3315.1|Name=mRNA_H-elongata_contig149605.3315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig149605:448..576+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAAACGAGGTCGCCAGCTGAGCTGCACGGCCTGCAAAGGCAAGGG
GGCGACGATCGGGTGTCTGGTAGAAACGTGCAAGAGCTCGTACCACTTCC
CCTGCGCGGAGGCGACGGGCTGGTCTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig149605:448..576+

>mRNA_H-elongata_contig149605.3315.1 ID=mRNA_H-elongata_contig149605.3315.1|Name=mRNA_H-elongata_contig149605.3315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig149605:448..576+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAAACGAGGTCGCCAGCTGAGCTGCACGGCCTGCAAAGGCAAGGG
GGCGACGATCGGGTGTCTGGTAGAAACGTGCAAGAGCTCGTACCACTTCC
CCTGCGCGGAGGCGACGGGCTGGTCTTTCCAGGTGAAACGAGGTCGCCAG
CTGAGCTGCACGGCCTGCAAAGGCAAGGGGGCGACGATCGGGTGTCTGGT
AGAAACGTGCAAGAGCTCGTACCACTTCCCCTGCGCGGAGGCGACGGGCT
GGTCTTTC
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