prot_H-elongata_contig148583.3267.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig148583.3267.1
Unique Nameprot_H-elongata_contig148583.3267.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length194
Homology
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BLAST of mRNA_H-elongata_contig148583.3267.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.710e-6
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:    1 MTRLTTLIPGAPPQCLRALVAGGGSPIPILAFASFRASDGAPVLVVLDAPTA 52
            +TR   LIPG  PQ LRA+  GGG  +P++  ASFR SDG+PVL+VLD   A
Sbjct:  522 VTRQRPLIPGVRPQSLRAMAVGGGRSLPVMILASFRPSDGSPVLIVLDTDAA 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148583.3267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE1.710e-655.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148583contigH-elongata_contig148583:442..1334 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148583.3267.1mRNA_H-elongata_contig148583.3267.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig148583 424..1334 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig148583.3267.1 ID=prot_H-elongata_contig148583.3267.1|Name=mRNA_H-elongata_contig148583.3267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MTRLTTLIPGAPPQCLRALVAGGGSPIPILAFASFRASDGAPVLVVLDAP
TAEEIEGGRAAATTPLASKMPSTVPTRFQPIEEIELCMRCCSKSVVAGYP
HSVWVEPFGVKAFVCRAPDGSDSSGGGEAGTFAAVKASPNKISFRMSITI
AEASLDESGGSRLGAWEHRHVGAPHEIGDTLERLGVLALGDTSE
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