mRNA_H-elongata_contig148556.3266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148556.3266.1
Unique NamemRNA_H-elongata_contig148556.3266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148556.3266.1 vs. uniprot
Match: D7FSN0_ECTSI (Mitochondrial import inner membrane translocase subunit TIM16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSN0_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 6.770e-8
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   10 SPFARILAQLAVASAGIVSRAFVSAYSQAVH 102
            +PFARI+AQLAVASAGIVSRAFVSAYSQAVH
Sbjct:    3 NPFARIIAQLAVASAGIVSRAFVSAYSQAVH 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148556.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSN0_ECTSI6.770e-893.55Mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148556contigH-elongata_contig148556:98..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size105
Cds size105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.776736-CDS-H-elongata_contig148556:97..2021622929879.776736-CDS-H-elongata_contig148556:97..202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148556 98..202 -
1691679193.1528566-CDS-H-elongata_contig148556:97..2021691679193.1528566-CDS-H-elongata_contig148556:97..202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148556 98..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148556.3266.1prot_H-elongata_contig148556.3266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148556 98..202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148556.3266.1

>prot_H-elongata_contig148556.3266.1 ID=prot_H-elongata_contig148556.3266.1|Name=mRNA_H-elongata_contig148556.3266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
MVPSPFARILAQLAVASAGIVSRAFVSAYSQAVHS
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mRNA from alignment at H-elongata_contig148556:98..202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148556.3266.1 ID=mRNA_H-elongata_contig148556.3266.1|Name=mRNA_H-elongata_contig148556.3266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig148556:98..202- (Himanthalia elongata Himel1 dioecious)
ATGGTACCCAGCCCTTTCGCCCGTATATTGGCACAGCTGGCGGTAGCAAG
CGCGGGGATCGTCTCGAGAGCCTTCGTTTCAGCATACTCTCAAGCGGTGC
ACAGT
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Coding sequence (CDS) from alignment at H-elongata_contig148556:98..202-

>mRNA_H-elongata_contig148556.3266.1 ID=mRNA_H-elongata_contig148556.3266.1|Name=mRNA_H-elongata_contig148556.3266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig148556:98..202- (Himanthalia elongata Himel1 dioecious)
ATGGTACCCAGCCCTTTCGCCCGTATATTGGCACAGCTGGCGGTAGCAAG
CGCGGGGATCGTCTCGAGAGCCTTCGTTTCAGCATACTCTCAAGCGGTGC
ACAGTATGGTACCCAGCCCTTTCGCCCGTATATTGGCACAGCTGGCGGTA
GCAAGCGCGGGGATCGTCTCGAGAGCCTTCGTTTCAGCATACTCTCAAGC
GGTGCACAGT
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