mRNA_H-elongata_contig147980.3236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147980.3236.1
Unique NamemRNA_H-elongata_contig147980.3236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.860e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:   10 PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   11 PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 63
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A6V1RZC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZC8_HETAK)

HSP 1 Score: 109 bits (273), Expect = 2.470e-28
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    7 TPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            TP VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   34 TPGVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 87
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S2UZT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZT5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.530e-27
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    7 TPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            +P VPQI PLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   15 SPGVPQITPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 68
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A836CM24_9STRA (Rab6, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM24_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.240e-26
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:   16 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            +PQ+APLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   16 IPQVAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 66
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S1TP34_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP34_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.980e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   19 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            P IAPLAKYKLVFLGDQ+VGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   14 PSIAPLAKYKLVFLGDQNVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 63
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S1XJY6_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJY6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.880e-25
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   19 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            P IAPLAKYKLVFLGDQ+VGKTSIITRFMYDNFDKNYQATIGIDFLSKTM
Sbjct:   14 PSIAPLAKYKLVFLGDQNVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 63
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S0FKM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKM4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.330e-24
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   25 IAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            +APLAKYKLVFLGDQSVGKTSIITRFMYDNFD++YQATIGIDFLSKTM
Sbjct:    3 LAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDRHYQATIGIDFLSKTM 50
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A7S2HHR8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHR8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-24
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:   16 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            VP+IAPLAKYKLVFLGDQSVGKTSIITRFMYD F+K+YQATIGIDFLSKTM
Sbjct:   19 VPKIAPLAKYKLVFLGDQSVGKTSIITRFMYDQFEKSYQATIGIDFLSKTM 69
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: K3WVM7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM7_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 1.730e-23
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    4 STPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            +T +VPQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTM
Sbjct:   27 NTVSVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTM 81
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BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.900e-23
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 TSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTM 168
            TS  ++PQI  LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTM
Sbjct:   11 TSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTM 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147980.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ4_ECTSI1.860e-28100.00Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1RZC8_HETAK2.470e-2898.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZT5_9STRA2.530e-2794.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM24_9STRA1.240e-2696.08Rab6, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TP34_9STRA1.980e-2596.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XJY6_9STRA6.880e-2596.00Hypothetical protein n=6 Tax=Phaeomonas parva TaxI... [more]
A0A7S0FKM4_9STRA2.330e-2493.75Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2HHR8_9STRA4.790e-2492.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WVM7_GLOUD1.730e-2385.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A4D9D1C8_9STRA1.900e-2383.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147980contigH-elongata_contig147980:586..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue5.7e-22
Seed eggNOG ortholog2880.D7FMQ4
Preferred nameRab6
KEGG koko:K07893,ko:K07976
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017076,GO:0019001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042147,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901265,GO:1901363
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG0094@1,KOG0094@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.9369967-CDS-H-elongata_contig147980:585..7561622929876.9369967-CDS-H-elongata_contig147980:585..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147980 586..756 +
1691679192.0821688-CDS-H-elongata_contig147980:585..7561691679192.0821688-CDS-H-elongata_contig147980:585..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147980 586..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147980.3236.1prot_H-elongata_contig147980.3236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147980 586..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147980.3236.1

>prot_H-elongata_contig147980.3236.1 ID=prot_H-elongata_contig147980.3236.1|Name=mRNA_H-elongata_contig147980.3236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
TSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGID
FLSKTM*
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mRNA from alignment at H-elongata_contig147980:586..756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147980.3236.1 ID=mRNA_H-elongata_contig147980.3236.1|Name=mRNA_H-elongata_contig147980.3236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig147980:586..756+ (Himanthalia elongata Himel1 dioecious)
ACCTCGACCCCCGCGGTCCCTCAGATAGCACCCCTGGCCAAGTACAAGCT
GGTGTTCCTCGGGGACCAGAGCGTGGGGAAGACGAGTATCATCACGCGAT
TCATGTACGACAATTTTGACAAGAACTACCAGGCCACGATCGGGATCGAC
TTCCTCTCCAAGACCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig147980:586..756+

>mRNA_H-elongata_contig147980.3236.1 ID=mRNA_H-elongata_contig147980.3236.1|Name=mRNA_H-elongata_contig147980.3236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig147980:586..756+ (Himanthalia elongata Himel1 dioecious)
ACCTCGACCCCCGCGGTCCCTCAGATAGCACCCCTGGCCAAGTACAAGCT
GGTGTTCCTCGGGGACCAGAGCGTGGGGAAGACGAGTATCATCACGCGAT
TCATGTACGACAATTTTGACAAGAACTACCAGGCCACGATCGGGATCGAC
TTCCTCTCCAAGACCATGTGAACCTCGACCCCCGCGGTCCCTCAGATAGC
ACCCCTGGCCAAGTACAAGCTGGTGTTCCTCGGGGACCAGAGCGTGGGGA
AGACGAGTATCATCACGCGATTCATGTACGACAATTTTGACAAGAACTAC
CAGGCCACGATCGGGATCGACTTCCTCTCCAAGACCATGTGA
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