mRNA_H-elongata_contig14763.3223.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: D7FKP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP9_ECTSI) HSP 1 Score: 442 bits (1136), Expect = 8.450e-147 Identity = 225/278 (80.94%), Postives = 240/278 (86.33%), Query Frame = 1
Query: 1 TVIDDVTEKFENLDLEELTEQQTKIQQMLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQG-GDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
TVIDDVT KFEN +EEL EQ+TKIQ LDSG+ASVD+EFWEAVLKELHVF+AMAKLR VHQVMLEAQL+KLE +RD MK+KR + GD XXXXXX DSSALA+GML NEK KGMGD EEGMDLADEV + G+TYWWHDK+RPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDL+DR DTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRG+RCVFERGVLSLYFNFKSLWYRK
Sbjct: 350 TVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQAMAKLRDVHQVMLEAQLEKLEEMRDNMKSKRASRAEGDXXXXXXXXEGKGPAIATTAA-----DSSALAMGMLANEKSKGMGDQEEGMDLADEVDMGGKTYWWHDKFRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLIDREDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGYRCVFERGVLSLYFNFKSLWYRK 622
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A7S2FHW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHW7_9STRA) HSP 1 Score: 306 bits (783), Expect = 1.330e-98 Identity = 156/262 (59.54%), Postives = 182/262 (69.47%), Query Frame = 1
Query: 46 EELTEQQTKIQQMLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
+ELT IQ ++S ++D EFWEA L+EL V++A A+LR+ HQ +L+ QL +LE R++++ R + + E D SA A+ M E KGM D EE M LADEV Q YWW DKYRPRKPRYFNRVKTGY+WNKYNQTHYDHDNPPPKTVQGYKFNVFYPDL+DR +TP+Y LE AD F ILRF AGPPYEDIAFKIINREWEFGRKRGF+CVFERG+L LYFNFK YRK
Sbjct: 6 DELTSTHMDIQLRINSNDPTIDVEFWEAALEELEVYRARAELREFHQKILKQQLGRLETKREELRIYREEHPEEMEKPAAGTGKDKAEAEDEPTANQ--DGSAAAVDMERAEAAKGMEDLEEEMGLADEVGTKDQVYWWQDKYRPRKPRYFNRVKTGYEWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLIDRTNTPRYILEPADTKEFCILRFSAGPPYEDIAFKIINREWEFGRKRGFKCVFERGILHLYFNFKRHRYRK 265
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A7S2BDL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BDL4_9STRA) HSP 1 Score: 311 bits (796), Expect = 4.730e-97 Identity = 160/276 (57.97%), Postives = 189/276 (68.48%), Query Frame = 1
Query: 4 VIDDVTEKFENLDLEELTEQQTKIQQMLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
V+D++ KF +ELT IQ ++S ++D EFWEA L+EL V++A A+LR+ HQ +L+ QL +LE R++++ R + + E D SA A+ M E KGM D EE M LADEV Q YWW DKYRPRKPRYFNRVKTGY+WNKYNQTHYDHDNPPPKTVQGYKFNVFYPDL+DR +TP+Y LE AD F ILRF AGPPYEDIAFKIINREWEFGRKRGF+CVFERG+L LYFNFK YRK
Sbjct: 250 VMDELRRKFAAKSSDELTSTHMDIQLRINSNDPTIDVEFWEAALEELEVYRARAELREFHQKILKQQLGRLETKREELRIYREEHPEEMEKPAAGTGKDKAEAEDEPTANQ--DGSAAAVDMERAEAAKGMEDLEEEMGLADEVGTKDQVYWWQDKYRPRKPRYFNRVKTGYEWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLIDRTNTPRYILEPADTKEFCILRFSAGPPYEDIAFKIINREWEFGRKRGFKCVFERGILHLYFNFKRHRYRK 523
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A835YNE1_9STRA (Cactus-binding C-terminus of cactin protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE1_9STRA) HSP 1 Score: 296 bits (758), Expect = 2.930e-90 Identity = 166/277 (59.93%), Postives = 202/277 (72.92%), Query Frame = 1
Query: 13 DVTEKFENLDLEELTEQQTKIQQMLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVD--QGGDA--EXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
DV E D L E + ++ + G+ VD +W AV ++L A A LR +H+ ML+ QL++LEALR++ +R + + G+ E XXXXXXXXXXXXXX D+S AL + V E+ KG+ D E+ M L DEV +G TYWW+DKYRPRKPRYFNRVKTGYDWNKYNQ+HYDHDNPPPKTVQGYKFNVFYPDL+DR+ TP++ LE +DHP AI+RF AGPPYEDIAFKI+NREWE+ RKRGFRCVFERGVLSL+FNFK YRK
Sbjct: 348 DVAALLEGRDAARLEELREQVDGRVQRGEGDVD--YWAAVSQQLRAHAARAALRALHEAMLQRQLERLEALREERARRRAEAIELGEPLPEDLQPAAXXXXXXXXXXXXXXADRDASDAALALEVAERGKGLEDLEDAMGLGDEVDTSGTTYWWNDKYRPRKPRYFNRVKTGYDWNKYNQSHYDHDNPPPKTVQGYKFNVFYPDLLDRSVTPQFKLEPSDHPDMAIIRFTAGPPYEDIAFKIVNREWEYARKRGFRCVFERGVLSLFFNFKRHRYRK 622
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A7S2KTJ2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTJ2_9STRA) HSP 1 Score: 266 bits (681), Expect = 9.100e-81 Identity = 135/276 (48.91%), Postives = 181/276 (65.58%), Query Frame = 1
Query: 4 VIDDVTEKFENLDLEELTEQQTKIQQMLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
V D+ + FEN + +T+I+ + +G A +D+++W ++L++L V +A A L ++H ML QL+KLE R+++ +++ + D E L + E G+ +E + L+DEV + TY W +KYRPRKPRYFNRV+TGYDWNKYNQTHYDHDNPPPKTVQGYKFN+FYPDL+D++ TP+YFLE AD F I+RF AG PYED+AFKIINREW RKRGF+CVFERGVLSL+FNF + WYR+
Sbjct: 194 VAKDIHKMFENQTTSAIHALKTEIESKIRNGGAGIDTDYWYSILEQLGVHQAKASLSEIHSTMLLRQLEKLEKRREELGSQQHLKKEDNETKASAGDDDETEQKVDN-----------GLSLQFPE-----GNLDEALGLSDEVDLGSGTYRWQEKYRPRKPRYFNRVRTGYDWNKYNQTHYDHDNPPPKTVQGYKFNIFYPDLVDKSKTPQYFLEPADSNEFCIIRFSAGAPYEDVAFKIINREWNKSRKRGFKCVFERGVLSLFFNFNTHWYRR 453
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A6S9JR17_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JR17_HETAK) HSP 1 Score: 267 bits (683), Expect = 2.750e-79 Identity = 135/260 (51.92%), Postives = 170/260 (65.38%), Query Frame = 1
Query: 94 GKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRV--------------DQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
G A D E+W AVL+ L V++A A LR++HQ ML+ QL +LE R ++ +R D G D++ D SA A+ M EK KGM D EE + L DEV + YWWHDKYRPRKPRYFNRVKTGYDWNKYNQ HYDH+NPPPKTVQGYKFN+FYPDL+D+++TPK+ LE A+ F ++RF AGPPYED+AFKI+NR W + RKRGF C FERG+L+L+ NF+ +YR+
Sbjct: 373 GGAGGDPEYWAAVLEHLAVYRAKATLRELHQHMLQVQLDRLEGRRKRLAEERAARRXXXXXXXXXGDDAGADSDGSYVV------------------DESAEAVAMERAEKAKGMDDLEEALGLQDEVKLDS-VYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 613
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A7S3L1D2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1D2_9STRA) HSP 1 Score: 266 bits (681), Expect = 1.190e-78 Identity = 141/262 (53.82%), Postives = 173/262 (66.03%), Query Frame = 1
Query: 49 ELTEQQTKIQQMLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHV-AGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
+L + QT+IQ L +G S+D E+W AV +L V A L +HQ ML QL+KLE RD++ KR D +AE ++ A+A+ + GD EE + L++EV A Y W DKYRPRKPRYFNRVKTGYDWNKYN+THYD DNPPPKTVQGYKFN+FYPDL+D + TP++ LE AD P F I+RF AGPPYED+AFKI+NREW RKRGFRC FERG+LSLYFNFK+ WYR+
Sbjct: 406 DLKQMQTEIQAKL-TGDGSIDKEYWRAVQDQLAVHLAKVDLSAMHQKMLVRQLEKLEQKRDELAQKRKDGTLEAEEDAEPAGA---------------EAGAVAI---PSNATGDEGDLEEELGLSNEVGTKAPDAYAWADKYRPRKPRYFNRVKTGYDWNKYNKTHYDKDNPPPKTVQGYKFNIFYPDLIDPSKTPQFVLEAADSPDFCIIRFKAGPPYEDVAFKIVNREWNKARKRGFRCTFERGILSLYFNFKTSWYRR 648
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: A0A7S4N022_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N022_9STRA) HSP 1 Score: 249 bits (637), Expect = 2.630e-77 Identity = 129/234 (55.13%), Postives = 149/234 (63.68%), Query Frame = 1
Query: 130 VLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
VL +L+V A L +H ML QL+KLE ++ + K + G AE D A + G+ EE + L EV + +Y W D+YRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFN+FYPDL+DR TP+Y LE AD P F I+RF AGPPYEDIAFK+INREW RKRGFRC FERGVLSLYFNF S WYR+
Sbjct: 1 VLNQLNVHLAKLDLSDLHSKMLVQQLEKLEKRKEDLA-KAAESGEGAEGEGEAEKEGP-------------DERAAQGALAPRGVEPNFGNLEEELGLGTEVDLGSASYAWQDRYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNIFYPDLIDRTRTPQYVLEPADSPEFCIVRFKAGPPYEDIAFKVINREWNRSRKRGFRCTFERGVLSLYFNFASHWYRR 220
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: W7TV84_9STRA (CactinC_cactus domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TV84_9STRA) HSP 1 Score: 248 bits (632), Expect = 4.290e-77 Identity = 110/176 (62.50%), Postives = 132/176 (75.00%), Query Frame = 1
Query: 343 DSSALALGMLVNEKRKGMGDDEEGMDLADEV-------------HVAGQTYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
D S AL +L E+ +G+ DE + DEV V G+TYWW DKYRPRKPRYFNRVKTG+DWN YN+THYDHDNPPPKTVQGYKFNVFYPDL+D+ P +F+E+ D+P F I+RFHAGPPYED+AFKI+N+EWE KRGF+C+FERG+LSLYFNFK YR+
Sbjct: 8 DDSTAALALLSAERGRGLAADEATLGKQDEVLLGEDGGEGGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Match: K0SBS4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBS4_THAOC) HSP 1 Score: 261 bits (666), Expect = 3.510e-76 Identity = 138/289 (47.75%), Postives = 182/289 (62.98%), Query Frame = 1
Query: 1 TVIDDVTEKFENLDLEELTEQQTKIQQMLDSGKAS-------VDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDQMKNKRVDQGGDAEXXXXXXXXXXXXXXXXXXXXXXXDSSALALGMLVNEKRKGMGDDEEGMDLADEVHVAGQ-----TYWWHDKYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLMDRNDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGFRCVFERGVLSLYFNFKSLWYRK 831
+++ D+ + F+ ++L + + I++ L SG A VD+++W VL +L V + A+L +H ML QL+KLE+ RD++K + + G+ E +++A L G+ EE + L DE +A +Y W D++RPRKPRYFNRVKTGYDWN YN+THYDHDNPPPK VQGYKFNVFYPDL+DR TP+YFLE+AD F ILRF AGPPYED+AFKIINR+W RKRGFRC FERGVLSLYFNF++ WYR+
Sbjct: 405 SMVGDINDLFKGQSTDDLLKMRRDIERKLGSGNAPRFDEDGVVDADYWRTVLDQLAVHLSKAELSDIHSKMLVRQLEKLESKRDELKRRALS--GEPEPKEEQRRTYG-------------ENTAAMAQPLPQGVEPDFGNLEEELGLNDEFDLAAANGGSASYPWQDRFRPRKPRYFNRVKTGYDWNAYNKTHYDHDNPPPKIVQGYKFNVFYPDLVDRTSTPQYFLERADTDQFCILRFSAGPPYEDVAFKIINRQWNKSRKRGFRCTFERGVLSLYFNFQTHWYRR 678 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14763.3223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14763.3223.1 >prot_H-elongata_contig14763.3223.1 ID=prot_H-elongata_contig14763.3223.1|Name=mRNA_H-elongata_contig14763.3223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp MLDSGKASVDSEFWEAVLKELHVFKAMAKLRKVHQVMLEAQLKKLEALRDback to top mRNA from alignment at H-elongata_contig14763:598..6165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14763.3223.1 ID=mRNA_H-elongata_contig14763.3223.1|Name=mRNA_H-elongata_contig14763.3223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5568bp|location=Sequence derived from alignment at H-elongata_contig14763:598..6165+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14763:598..6165+ >mRNA_H-elongata_contig14763.3223.1 ID=mRNA_H-elongata_contig14763.3223.1|Name=mRNA_H-elongata_contig14763.3223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig14763:598..6165+ (Himanthalia elongata Himel1 dioecious)back to top |