mRNA_H-elongata_contig147369.3213.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147369.3213.1
Unique NamemRNA_H-elongata_contig147369.3213.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A0A6H5JXT2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.070e-43
Identity = 70/95 (73.68%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    4 KVLSLKNNGISACFVGGSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPSVGI 288
            +VLSL +NGISAC VGGSSD  TE+KAI G +PLVFVTPEKV+ WDHGL+ M+ GPGLAL AVDESHCV EWGHDFRPSY EL  LR +FP V I
Sbjct:    4 QVLSLASNGISACLVGGSSDLRTEEKAIKGDYPLVFVTPEKVSGWDHGLKAMQAGPGLALIAVDESHCVAEWGHDFRPSYLELRSLRDRFPQVPI 98
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BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: D7G9E9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E9_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.530e-41
Identity = 70/95 (73.68%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    4 KVLSLKNNGISACFVGGSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPSVGI 288
            +VLSL +NGISAC VGGSSD  TE+KAI G +PLVFVTPEKV+ WDHGL+ M+ GPGLAL AVDESHCV EWGHDFRPSY EL  LR KFP V +
Sbjct:   26 QVLSLASNGISACLVGGSSDLRTEEKAIKGDYPLVFVTPEKVSGWDHGLKAMQAGPGLALIAVDESHCVAEWGHDFRPSYLELRSLRDKFPQVPL 120
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BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A0A446JN67_TRITD (Helicase ATP-binding domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446JN67_TRITD)

HSP 1 Score: 96.3 bits (238), Expect = 2.940e-23
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPS 279
            L L  +GISACF+G G  D   E KA++G + +++V PE V      L+ +   PG+ALFA+DE HCV +WGHDFRP Y +L  LR+ F S
Sbjct:    6 LKLAKHGISACFLGSGQPDNRVEGKAMAGMYKIIYVCPETVLRLMEPLKKLAEKPGIALFAIDEVHCVSKWGHDFRPDYRKLSVLRQNFCS 96
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BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: UPI000C1D606B (ATP-dependent DNA helicase Q-like SIM isoform X1 n=3 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D606B)

HSP 1 Score: 101 bits (251), Expect = 8.060e-23
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKF 273
            L L  +GISACF+G G  D++ E KAISG + +++V PE +      L+++  G G+ALFA+DE HCV +WGHDFRP Y  LC LR  F
Sbjct:  232 LKLAKHGISACFLGSGQIDKSVEQKAISGVYNIIYVCPETILRLIKPLQSLAEGRGIALFAIDEVHCVSKWGHDFRPDYRRLCVLRENF 320
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BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A0A2G2W7X9_CAPBA (DNA helicase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W7X9_CAPBA)

HSP 1 Score: 100 bits (249), Expect = 1.410e-22
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKF 273
            L L N+G+SACF+G G +DR+ E KA+SG + +++V PE +      LR++    G+ALFA+DE HCV +WGHDFRP Y  L  LR  F
Sbjct:  224 LKLANHGVSACFLGSGQTDRSVEQKAMSGMYSIIYVCPETILRLIKPLRSLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSILRENF 312
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BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: UPI001FB11731 (ATP-dependent DNA helicase Q-like SIM isoform X2 n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB11731)

HSP 1 Score: 100 bits (249), Expect = 1.480e-22
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKF 273
            L L N+G+SACF+G G +DR+ E KA+SG + +++V PE +      LR++    G+ALFA+DE HCV +WGHDFRP Y  L  LR  F
Sbjct:  224 LKLANHGVSACFLGSGQTDRSVEQKAMSGMYSIIYVCPETILRLIKPLRSLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSILRENF 312
[Close]
BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A0A2G2XW06_CAPAN (ATP-dependent DNA helicase n=3 Tax=Capsicum TaxID=4071 RepID=A0A2G2XW06_CAPAN)

HSP 1 Score: 100 bits (249), Expect = 1.500e-22
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKF 273
            L L N+G+SACF+G G +DR+ E KA+SG + +++V PE +      LR++    G+ALFA+DE HCV +WGHDFRP Y  L  LR  F
Sbjct:  224 LKLANHGVSACFLGSGQTDRSVEQKAMSGMYSIIYVCPETILRLIKPLRSLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSILRENF 312
[Close]
BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A9T1T4_PHYPA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T1T4_PHYPA)

HSP 1 Score: 100 bits (248), Expect = 2.010e-22
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPSVGI 288
            L L   G+SACF+G G  D+  E KA++G + +V+V PE +   +  L+++ RG G+ALFAVDE+HC+ +WGHDFRP+Y +L  LR KF  VG+
Sbjct:   75 LQLARQGVSACFLGSGQVDKTIELKAMAGIYNIVYVCPETLPRLESCLQSLARGKGIALFAVDEAHCISKWGHDFRPTYRQLSMLRDKF-KVGV 167
[Close]
BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A0A2K1ITP0_PHYPA (DNA helicase n=9 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1ITP0_PHYPA)

HSP 1 Score: 100 bits (248), Expect = 2.070e-22
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPSVGI 288
            L L   G+SACF+G G  D+  E KA++G + +V+V PE +   +  L+++ RG G+ALFAVDE+HC+ +WGHDFRP+Y +L  LR KF  VG+
Sbjct:  430 LQLARQGVSACFLGSGQVDKTIELKAMAGIYNIVYVCPETLPRLESCLQSLARGKGIALFAVDEAHCISKWGHDFRPTYRQLSMLRDKF-KVGV 522
[Close]
BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Match: A0A4S8K1N6_MUSBA (ATP-dependent DNA helicase n=3 Tax=Musa TaxID=4640 RepID=A0A4S8K1N6_MUSBA)

HSP 1 Score: 99.8 bits (247), Expect = 2.790e-22
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   10 LSLKNNGISACFVG-GSSDRATEDKAISGHFPLVFVTPEKVAMWDHGLRTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPSVGI 288
            L L  +G+SACF+G G  D   E KA+ G + +V+V PE +      LR +   PG+ALFA+DE HCV +WGHDFRP Y  LC LR  F S  +
Sbjct:  253 LKLAKHGVSACFLGSGQPDSTVEYKAMCGMYKIVYVCPETILRLIEPLRRLAVNPGIALFAIDEVHCVSKWGHDFRPDYRRLCMLRENFNSCNL 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147369.3213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXT2_9PHAE1.070e-4373.68DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G9E9_ECTSI1.530e-4173.68ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A446JN67_TRITD2.940e-2348.35Helicase ATP-binding domain-containing protein n=2... [more]
UPI000C1D606B8.060e-2350.56ATP-dependent DNA helicase Q-like SIM isoform X1 n... [more]
A0A2G2W7X9_CAPBA1.410e-2249.44DNA helicase n=1 Tax=Capsicum baccatum TaxID=33114... [more]
UPI001FB117311.480e-2249.44ATP-dependent DNA helicase Q-like SIM isoform X2 n... [more]
A0A2G2XW06_CAPAN1.500e-2249.44ATP-dependent DNA helicase n=3 Tax=Capsicum TaxID=... [more]
A9T1T4_PHYPA2.010e-2248.94ATP-dependent DNA helicase (Fragment) n=1 Tax=Phys... [more]
A0A2K1ITP0_PHYPA2.070e-2248.94DNA helicase n=9 Tax=Physcomitrium patens TaxID=32... [more]
A0A4S8K1N6_MUSBA2.790e-2247.87ATP-dependent DNA helicase n=3 Tax=Musa TaxID=4640... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147369contigH-elongata_contig147369:182..1221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3e-34
Seed eggNOG ortholog2880.D7G9E9
KEGG koko:K03654
KEGG Pathwayko03018,map03018
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0030145,GO:0031974,GO:0031981,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.8541596-CDS-H-elongata_contig147369:181..3071622929874.8541596-CDS-H-elongata_contig147369:181..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147369 182..307 +
1691679191.2977242-CDS-H-elongata_contig147369:181..3071691679191.2977242-CDS-H-elongata_contig147369:181..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147369 182..307 +
1622929874.865187-CDS-H-elongata_contig147369:1044..12211622929874.865187-CDS-H-elongata_contig147369:1044..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147369 1045..1221 +
1691679191.3070652-CDS-H-elongata_contig147369:1044..12211691679191.3070652-CDS-H-elongata_contig147369:1044..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147369 1045..1221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147369.3213.1prot_H-elongata_contig147369.3213.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147369 182..1221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147369.3213.1

>prot_H-elongata_contig147369.3213.1 ID=prot_H-elongata_contig147369.3213.1|Name=mRNA_H-elongata_contig147369.3213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MKVLSLKNNGISACFVGGSSDRATEDKAISGHFPLVFVTPEKVAMWDHGL
RTMERGPGLALFAVDESHCVVEWGHDFRPSYEELCCLRRKFPSVGIGNRG
*
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mRNA from alignment at H-elongata_contig147369:182..1221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147369.3213.1 ID=mRNA_H-elongata_contig147369.3213.1|Name=mRNA_H-elongata_contig147369.3213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-elongata_contig147369:182..1221+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGCTCTCTCTGAAGAACAACGGCATTTCGGCGTGTTTTGTAGG
GGGATCATCCGACCGAGCGACAGAGGATAAGGCCATATCAGGGCATTTCC
CCCTGGTGTTCGTCACACCAGAAAAGGTACTGCTATCCTACTACACTCTG
CCCTGCTGTAAGGTACTGATGTAAGGTACTGTTGTAGCCCCTTTTTAAAG
TGATATCCTTGCAGGCTACAAAAATGCGCGGAGAAATGGCGACTTCGAAT
CTCGACAAAGGTACCTTTTTTACGATCTTGATTTGGTAACGGAAAAGCGC
GAGCTAGCATAATTCAATCGAAACGTTGGTGAGGCCTAAGAGGGCTGGCT
GACCATACCATACATTTCGAACAGGTAAACATACGGAACATTACAGCAGT
AGTACAGCAGCTGCATTGCGCGAACCATTATATAAGGGAGAGGAGGGAGA
TACGGTTACCCCTTAGAGTGTCGGACAACCCCCAATCCGCATTATGGTGA
TTTTATTGCGTGTGGCCATTATAACAACCTTGGAAGAGAGTTGGGTTGTC
AAATATGATGGTCCAATCAATATTCCGGGTGAAAGCCCTAACCCCCCCTA
TCAAATGTTATTAGGGGGCACTGCGCCAGGTGCTATCTTCTCTCAGCCCT
CATGGAAGCATCCGACCTGCTCCGCTGTGAATCCGAGCTGAGCCCTTCTA
TTCAATATGGCACCTTGGCACCTTGGTGATGAGAGTTGTGCAAAGACTAA
GGCTACCTCCACACAAGCGGGTTCATTCGCTTCGCGCTGTCCTGACGATT
TTGACGATATTGACGAAATAATACTGCTGCGCCTTGCCCGCGGCACGTTT
GTGGCAAGGTCAGGTGGCGATGTGGGATCATGGCCTGAGAACGATGGAAC
GAGGGCCAGGCCTGGCGTTGTTCGCAGTAGATGAGAGCCATTGCGTCGTG
GAATGGGGTCACGACTTTCGCCCGTCCTACGAGGAGCTCTGTTGCCTTCG
GAGAAAATTTCCATCGGTGGGTATAGGGAATAGGGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig147369:182..1221+

>mRNA_H-elongata_contig147369.3213.1 ID=mRNA_H-elongata_contig147369.3213.1|Name=mRNA_H-elongata_contig147369.3213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig147369:182..1221+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGCTCTCTCTGAAGAACAACGGCATTTCGGCGTGTTTTGTAGG
GGGATCATCCGACCGAGCGACAGAGGATAAGGCCATATCAGGGCATTTCC
CCCTGGTGTTCGTCACACCAGAAAAGATGAAGGTGCTCTCTCTGAAGAAC
AACGGCATTTCGGCGTGTTTTGTAGGGGGATCATCCGACCGAGCGACAGA
GGATAAGGCCATATCAGGGCATTTCCCCCTGGTGTTCGTCACACCAGAAA
AGGTGGCGATGTGGGATCATGGCCTGAGAACGATGGAACGAGGGCCAGGC
CTGGCGTTGTTCGCAGTAGATGAGAGCCATTGCGTCGTGGAATGGGGTCA
CGACTTTCGCCCGTCCTACGAGGAGCTCTGTTGCCTTCGGAGAAAATTTC
CATCGGTGGGTATAGGGAATAGGGGATAGGTGGCGATGTGGGATCATGGC
CTGAGAACGATGGAACGAGGGCCAGGCCTGGCGTTGTTCGCAGTAGATGA
GAGCCATTGCGTCGTGGAATGGGGTCACGACTTTCGCCCGTCCTACGAGG
AGCTCTGTTGCCTTCGGAGAAAATTTCCATCGGTGGGTATAGGGAATAGG
GGATAG
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