mRNA_H-elongata_contig147256.3204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147256.3204.1
Unique NamemRNA_H-elongata_contig147256.3204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A6H5KHS4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS4_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 5.540e-41
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDV 219
            KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESD+
Sbjct:   60 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDI 132
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A836CI29_9STRA (Serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI29_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.170e-29
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDV 219
            +VILHNEKQDGFPLTSLRE+ LLKRI+H +CV LLDVAVGR R+ VFLVFEYCEHDLA LL++ ++PFS S+V
Sbjct:   72 RVILHNEKQDGFPLTSLREVALLKRIAHSNCVALLDVAVGRNRDGVFLVFEYCEHDLAHLLETVRRPFSVSEV 144
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A5D6XNC6_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNC6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.720e-27
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLL---DSTKKPFSESDV 219
            +V+LHNE  DGFP+T+LREI+LLKR+ HP+CVRLLDVAVGR+R  VFLVFEYCEHDL+ LL     ++ PF ES++
Sbjct:   52 RVLLHNEASDGFPITALREIKLLKRLRHPNCVRLLDVAVGRKRSSVFLVFEYCEHDLSLLLRHQSKSRNPFKESEL 127
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A7S2R4R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4R4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.120e-26
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDV 219
            KVILHNE+Q GFP+TS+REI+LLKRISHP+CVRL DV VG  R+ VFLVFEYCEHD+A L+++  K FSE+++
Sbjct:   65 KVILHNEQQVGFPITSIREIRLLKRISHPNCVRLEDVVVGTGRDAVFLVFEYCEHDMASLMETMGKRFSEAEI 137
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A6G0WSG0_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSG0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 9.480e-26
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDVSK 225
            +VILHNEKQDGFP+T++REI+LLKR+   +CV+L DV VGR+R  VFLVFEYCEHDL+ L+++  +PFS+S+  +
Sbjct:   53 RVILHNEKQDGFPITAIREIKLLKRLQQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALMNNNHRPFSQSEAKR 127
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A7S2C5K6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5K6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.020e-25
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDV 219
            KVILHNEKQ GFP+TSLRE++LLKR++HP+CV L +VAVG+ R+ VFLV EYCEHD+A L+D+    FSES+V
Sbjct:   59 KVILHNEKQVGFPITSLREVRLLKRLNHPNCVLLREVAVGKNRDAVFLVMEYCEHDMASLIDNMCTRFSESEV 131
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A485LJF1_9STRA (Aste57867_21902 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJF1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.140e-25
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDVSK 225
            +VILHNEKQDGFP+T++REI+LLKR+   +CV+L DV VGR+R  VFLVFEYCEHDL+ L+ +  +PFSES+  +
Sbjct:   56 RVILHNEKQDGFPITAIREIKLLKRLHQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALMSNIHRPFSESEAKR 130
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A1V9YV83_9STRA (Protein kinase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YV83_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.230e-25
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDVSK 225
            +VILHNEKQDGFP+T++REI+LLKR+   +CV+L DV VGR+R  VFLVFEYCEHDL+ L+ + K+PF+ES+  +
Sbjct:   54 RVILHNEKQDGFPITAIREIKLLKRLHQENCVQLKDVVVGRKRSSVFLVFEYCEHDLSALMTNVKRPFTESEYKR 128
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BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A1V9Z1R6_9STRA (Cyclin-dependent kinase 10-like isoform X1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1R6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.250e-25
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDVSK 225
            +VILHNEKQDGFP+T++REI+LLKR+   +CV+L DV VGR+R  VFLVFEYCEHDL+ L+ + ++PF+ES+  +
Sbjct:   50 RVILHNEKQDGFPITAIREIKLLKRLHQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALMTNVRQPFTESEAKR 124
[Close]
BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Match: A0A067CMD0_SAPPC (CMGC/CDK protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CMD0_SAPPC)

HSP 1 Score: 105 bits (263), Expect = 1.380e-25
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDVSK 225
            +VILHNEKQDGFP+T++REI+LLKR+   +CV+L DV VGR+R  VFLVFEYCEHDL+ LL + + PF+ES+  +
Sbjct:   49 RVILHNEKQDGFPITAIREIKLLKRLRQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALLTNVRHPFTESEAKR 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147256.3204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHS4_9PHAE5.540e-4198.63Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CI29_9STRA1.170e-2975.34Serine/threonine kinase n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XNC6_9STRA9.720e-2765.79Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S2R4R4_9STRA2.120e-2668.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0WSG0_9STRA9.480e-2661.33Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7S2C5K6_9STRA1.020e-2567.12Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485LJF1_9STRA1.140e-2562.67Aste57867_21902 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YV83_9STRA1.230e-2562.67Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A1V9Z1R6_9STRA1.250e-2561.33Cyclin-dependent kinase 10-like isoform X1 n=1 Tax... [more]
A0A067CMD0_SAPPC1.380e-2562.67CMGC/CDK protein kinase n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147256contigH-elongata_contig147256:523..750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog112098.XP_008604143.1
Preferred nameCDK10
KEGG koko:K02449,ko:K08818
GOsGO:0000226,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016592,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0023051,GO:0023056,GO:0030154,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033554,GO:0034641,GO:0036064,GO:0036211,GO:0042127,GO:0042325,GO:0042327,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043410,GO:0043412,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0045787,GO:0045931,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051445,GO:0051493,GO:0051716,GO:0051726,GO:0060255,GO:0060491,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072686,GO:0080090,GO:0090068,GO:0090304,GO:0097472,GO:0120025,GO:0120032,GO:0120033,GO:0120035,GO:0120038,GO:0140096,GO:1900087,GO:1901360,GO:1901564,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902531,GO:1902533,GO:1902806,GO:1902808,GO:1903047,GO:2000045,GO:2000241
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0663@1,KOG0663@2759
EC2.7.11.22
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncdk10/11, putative
Ec32 orthologEc-03_002760.1
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.0088034-CDS-H-elongata_contig147256:522..7501622929874.0088034-CDS-H-elongata_contig147256:522..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147256 523..750 -
1691679190.9285693-CDS-H-elongata_contig147256:522..7501691679190.9285693-CDS-H-elongata_contig147256:522..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147256 523..750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147256.3204.1prot_H-elongata_contig147256.3204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147256 523..750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147256.3204.1

>prot_H-elongata_contig147256.3204.1 ID=prot_H-elongata_contig147256.3204.1|Name=mRNA_H-elongata_contig147256.3204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
KVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVF
EYCEHDLAGLLDSTKKPFSESDVSK*
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mRNA from alignment at H-elongata_contig147256:523..750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147256.3204.1 ID=mRNA_H-elongata_contig147256.3204.1|Name=mRNA_H-elongata_contig147256.3204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig147256:523..750- (Himanthalia elongata Himel1 dioecious)
AAGGTGATCCTCCACAATGAGAAGCAGGACGGCTTCCCGCTCACCTCCCT
CCGAGAGATACAGCTCCTGAAGAGGATTTCCCACCCAAGCTGCGTTCGCC
TCCTGGACGTGGCCGTGGGTAGGCGCAGAGAGATGGTCTTCCTGGTGTTC
GAGTACTGCGAGCACGACCTGGCGGGACTGTTGGACTCCACCAAGAAGCC
TTTTTCGGAATCTGACGTGAGCAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig147256:523..750-

>mRNA_H-elongata_contig147256.3204.1 ID=mRNA_H-elongata_contig147256.3204.1|Name=mRNA_H-elongata_contig147256.3204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig147256:523..750- (Himanthalia elongata Himel1 dioecious)
AAGGTGATCCTCCACAATGAGAAGCAGGACGGCTTCCCGCTCACCTCCCT
CCGAGAGATACAGCTCCTGAAGAGGATTTCCCACCCAAGCTGCGTTCGCC
TCCTGGACGTGGCCGTGGGTAGGCGCAGAGAGATGGTCTTCCTGGTGTTC
GAGTACTGCGAGCACGACCTGGCGGGACTGTTGGACTCCACCAAGAAGCC
TTTTTCGGAATCTGACGTGAGCAAATAGAAGGTGATCCTCCACAATGAGA
AGCAGGACGGCTTCCCGCTCACCTCCCTCCGAGAGATACAGCTCCTGAAG
AGGATTTCCCACCCAAGCTGCGTTCGCCTCCTGGACGTGGCCGTGGGTAG
GCGCAGAGAGATGGTCTTCCTGGTGTTCGAGTACTGCGAGCACGACCTGG
CGGGACTGTTGGACTCCACCAAGAAGCCTTTTTCGGAATCTGACGTGAGC
AAATAG
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