mRNA_H-elongata_contig14694.3184.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14694.3184.1
Unique NamemRNA_H-elongata_contig14694.3184.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14694.3184.1 vs. uniprot
Match: A0A6G6CDI6_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDI6_SACJA)

HSP 1 Score: 85.1 bits (209), Expect = 5.130e-16
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  169 ARALGLIVCGVYKDQMDSSVGVDDSRYLLVRYEDIASSPESMVEHIYRWSGLGAVPSRVSLWLHENTRLPDC 384
            +RA G  VCG Y+ Q+D+S  +++SRYLL+RYEDIA++PE  VE +Y W+GLG +P+ V  W+  NT++P C
Sbjct:  129 SRAGGTSVCGTYRVQLDTSKKLEESRYLLMRYEDIATTPEIAVELMYYWAGLGPLPANVKEWIDANTKMPAC 200
[Close]
BLAST of mRNA_H-elongata_contig14694.3184.1 vs. uniprot
Match: A0A7L4XQX3_SACJA (Carbohydrate sulfotranserase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A7L4XQX3_SACJA)

HSP 1 Score: 85.5 bits (210), Expect = 6.410e-16
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:  169 ARALGLIVCGVYKDQMDSSVGVDDSRYLLVRYEDIASSPESMVEHIYRWSGLGAVPSRVSLWLHENTRLPDC 384
            A A G  +CG Y++Q+DSS  + D RYL VRYEDIA+SPE  V  IY W GLG VP+ VS W+  NT +P C
Sbjct:  207 AHAGGASICGSYRNQLDSSKKLGDDRYLRVRYEDIATSPELAVAFIYYWCGLGTVPASVSEWVEVNTNMPTC 278
[Close]
BLAST of mRNA_H-elongata_contig14694.3184.1 vs. uniprot
Match: A0A2G8KTW7_STIJA (Putative carbohydrate sulfotransferase 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KTW7_STIJA)

HSP 1 Score: 55.8 bits (133), Expect = 1.030e-5
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  238 DSRYLLVRYEDIASSPESMVEHIYRWSGLGAVPSRVSLWLHENTRL 375
            + RY+LVRYEDIA  PE     +Y+++GLG VPS V  W+  NT +
Sbjct:  253 EGRYMLVRYEDIAYDPEKWANQVYKFAGLGTVPSEVLSWIRTNTNV 298
[Close]
BLAST of mRNA_H-elongata_contig14694.3184.1 vs. uniprot
Match: A0A7M7REN6_STRPU (Sulfotransfer_1 domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7REN6_STRPU)

HSP 1 Score: 53.5 bits (127), Expect = 7.390e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  241 SRYLLVRYEDIASSPESMVEHIYRWSGLGAVPSRVSLWLHENTR 372
            SRYL VRYEDIA+ PE     +Y+++G+G VP  V  W+ +NTR
Sbjct:  420 SRYLRVRYEDIATDPEGWTAALYKFAGMGDVPVNVHNWIQQNTR 463
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14694.3184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6G6CDI6_SACJA5.130e-1651.39Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A7L4XQX3_SACJA6.410e-1655.56Carbohydrate sulfotranserase n=2 Tax=Saccharina ja... [more]
A0A2G8KTW7_STIJA1.030e-550.00Putative carbohydrate sulfotransferase 1-like n=1 ... [more]
A0A7M7REN6_STRPU7.390e-552.27Sulfotransfer_1 domain-containing protein n=2 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14694contigH-elongata_contig14694:819..2185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size631
Cds size630
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14694.3184.1prot_H-elongata_contig14694.3184.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14694 819..2185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.5573823-CDS-H-elongata_contig14694:818..12031622929872.5573823-CDS-H-elongata_contig14694:818..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 819..1203 -
1691679190.2455757-CDS-H-elongata_contig14694:818..12031691679190.2455757-CDS-H-elongata_contig14694:818..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 819..1203 -
1622929872.5716848-CDS-H-elongata_contig14694:1558..16151622929872.5716848-CDS-H-elongata_contig14694:1558..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 1559..1615 -
1691679190.2526295-CDS-H-elongata_contig14694:1558..16151691679190.2526295-CDS-H-elongata_contig14694:1558..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 1559..1615 -
1622929872.5868301-CDS-H-elongata_contig14694:1997..21851622929872.5868301-CDS-H-elongata_contig14694:1997..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 1998..2185 -
1691679190.2668679-CDS-H-elongata_contig14694:1997..21851691679190.2668679-CDS-H-elongata_contig14694:1997..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 1998..2185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14694.3184.1

>prot_H-elongata_contig14694.3184.1 ID=prot_H-elongata_contig14694.3184.1|Name=mRNA_H-elongata_contig14694.3184.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
HSQIKNFNVAHKYRRYFGKSQETNVTEVGDASQGQGAGTVGGERGMTALP
WAGPERARALGLIVCGVYKDQMDSSVGVDDSRYLLVRYEDIASSPESMVE
HIYRWSGLGAVPSRVSLWLHENTRLPDCVDPSPPAAVTTGTTAEVAENQG
EKLLVPLESAPIASKRPNLRGFEAGGRSEPRVGAEAEASRGDVDNVSRRT
IGNNDQSGGG
back to top

mRNA from alignment at H-elongata_contig14694:819..2185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14694.3184.1 ID=mRNA_H-elongata_contig14694.3184.1|Name=mRNA_H-elongata_contig14694.3184.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-elongata_contig14694:819..2185- (Himanthalia elongata Himel1 dioecious)
CACTCTCAAATCAAAAATTTCAATGTCGCGCACAAGTATCGCCGCTACTT
CGGCAAAAGTCAGGAAACGAACGTCACTGAAGTTGGCGATGCTAGCCAAG
GTCAAGGCGCCGGAACGGTGGGAGGTGAACGAGGAATGACGGCGTTGCCC
TGGGCAGGACCAGAGCGAGCTCGCGCGCTGGGGCTCATGTAAGTTTCGGC
GCCGGTCTCTCGTTTTTAAGAGGATGCAGTTCAGGCACTATCCCTTCCTT
AACAGACTCATGTTGGGGCAGAGCCATCACAGAAAAATGGTGGTTGTACC
GGAGTCAGGAATCGTCCTAGACGGTGGGTAGTCGTCCGAGAGGCCTCGTG
GTCCCGTGATAGCGAAGCTCTGCCGTTTTTTGTTCAGGCCATTGCGTTAG
AGCGGGAGAAGTTCTTGTCAAAAATGCAACATACGGACGTTACGAGGCGA
GGGACATAAGCCAAGACGCTTTGGAGAGGGGTTGGTAACGCGTGCGATCT
TACCCCGTGAAACTGATACCTGCTAACGACGATATGGCTTGCGCGTTTGA
TGCCCGTTTTTCCCCCGTAGAGTTTGTGGAGTCTACAAGGATCAAATGGA
TTCGTCTGTGGGAGTCGACGACAGCAGGTAGGCGGTGCGGGGGGTGTGGG
TGTCTAGAGGGTCTTCAACACGCGAAAAAGACTACAAAGCGCGAGCGTGT
CACTCGTCACTTGGTTGTCAACTCTATGATAATGGTGTCGTGGATCTCGA
GCGTCTTTGGTGCGGATACGATTCCTTTCTTTCGGCGTTCGTAGGCTTCG
AGCGTACACCCGGCCCGCCCCCACGGCAAACACGCGATTGACTTTGTTCG
TAATTATCCTCTCGCCTGCTTTTACCCCTTATGACCCGGATGCAAAAGCG
ACTCTTTCCCCTTTCGAGCCGAGCGTAAGCCCGCCCCCACCTCTCGACGT
ACCCATCGCTACACGCCCCAACCTGACCTCAGGTACCTCCTCGTGAGATA
CGAAGACATTGCGTCGTCTCCCGAGTCAATGGTCGAGCACATCTACCGCT
GGTCGGGGCTTGGAGCCGTGCCCTCCCGGGTTTCCCTTTGGCTCCACGAA
AACACCCGTCTTCCCGACTGTGTTGATCCCTCCCCGCCTGCCGCCGTGAC
CACCGGCACCACCGCTGAGGTCGCAGAAAATCAAGGTGAGAAGCTCCTCG
TTCCTCTGGAAAGCGCCCCTATCGCCTCAAAGCGACCCAATTTGCGGGGG
TTCGAGGCGGGGGGTCGCTCCGAGCCGCGAGTGGGCGCAGAGGCGGAGGC
ATCCCGGGGGGACGTGGACAATGTCTCGAGAAGGACGATCGGGAACAATG
ACCAAAGCGGAGGGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14694:819..2185-

>mRNA_H-elongata_contig14694.3184.1 ID=mRNA_H-elongata_contig14694.3184.1|Name=mRNA_H-elongata_contig14694.3184.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig14694:819..2185- (Himanthalia elongata Himel1 dioecious)
CACTCTCAAATCAAAAATTTCAATGTCGCGCACAAGTATCGCCGCTACTT
CGGCAAAAGTCAGGAAACGAACGTCACTGAAGTTGGCGATGCTAGCCAAG
GTCAAGGCGCCGGAACGGTGGGAGGTGAACGAGGAATGACGGCGTTGCCC
TGGGCAGGACCAGAGCGAGCTCGCGCGCTGGGGCTCATCACTCTCAAATC
AAAAATTTCAATGTCGCGCACAAGTATCGCCGCTACTTCGGCAAAAGTCA
GGAAACGAACGTCACTGAAGTTGGCGATGCTAGCCAAGGTCAAGGCGCCG
GAACGGTGGGAGGTGAACGAGGAATGACGGCGTTGCCCTGGGCAGGACCA
GAGCGAGCTCGCGCGCTGGGGCTCATAGTTTGTGGAGTCTACAAGGATCA
AATGGATTCGTCTGTGGGAGTCGACGACAGCAGAGTTTGTGGAGTCTACA
AGGATCAAATGGATTCGTCTGTGGGAGTCGACGACAGCAGGTACCTCCTC
GTGAGATACGAAGACATTGCGTCGTCTCCCGAGTCAATGGTCGAGCACAT
CTACCGCTGGTCGGGGCTTGGAGCCGTGCCCTCCCGGGTTTCCCTTTGGC
TCCACGAAAACACCCGTCTTCCCGACTGTGTTGATCCCTCCCCGCCTGCC
GCCGTGACCACCGGCACCACCGCTGAGGTCGCAGAAAATCAAGGTGAGAA
GCTCCTCGTTCCTCTGGAAAGCGCCCCTATCGCCTCAAAGCGACCCAATT
TGCGGGGGTTCGAGGCGGGGGGTCGCTCCGAGCCGCGAGTGGGCGCAGAG
GCGGAGGCATCCCGGGGGGACGTGGACAATGTCTCGAGAAGGACGATCGG
GAACAATGACCAAAGCGGAGGGGGAGTACCTCCTCGTGAGATACGAAGAC
ATTGCGTCGTCTCCCGAGTCAATGGTCGAGCACATCTACCGCTGGTCGGG
GCTTGGAGCCGTGCCCTCCCGGGTTTCCCTTTGGCTCCACGAAAACACCC
GTCTTCCCGACTGTGTTGATCCCTCCCCGCCTGCCGCCGTGACCACCGGC
ACCACCGCTGAGGTCGCAGAAAATCAAGGTGAGAAGCTCCTCGTTCCTCT
GGAAAGCGCCCCTATCGCCTCAAAGCGACCCAATTTGCGGGGGTTCGAGG
CGGGGGGTCGCTCCGAGCCGCGAGTGGGCGCAGAGGCGGAGGCATCCCGG
GGGGACGTGGACAATGTCTCGAGAAGGACGATCGGGAACAATGACCAAAG
CGGAGGGGGA
back to top