mRNA_H-elongata_contig146731.3172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146731.3172.1
Unique NamemRNA_H-elongata_contig146731.3172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.920e-32
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 YTNLRHKFLRRKSAHQRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNLARGL 228
            YTNLRH+FLRRKSAH RTIVV+GVP+EMRSDSKLFTYFNTLYP EVVNVHIPQ+L  LR LIR+RQ VL+NL +GL
Sbjct:  212 YTNLRHRFLRRKSAHLRTIVVQGVPREMRSDSKLFTYFNTLYPEEVVNVHIPQNLSRLRGLIRERQAVLENLGKGL 287
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A7S3UXJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXJ8_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 YTNLRHKFLRRKSAHQRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNLARGL 228
            YT LRH+FLRR+ A  R+++VE VP+ +RS + L  YF  LYPG+VV V + Q L  L RLI QR+ VL  L   +
Sbjct:  172 YTRLRHEFLRRRRALFRSVLVEEVPRPLRSQATLRAYFEKLYPGQVVEVFLCQRLEALTRLIEQRESVLAKLEHAM 247
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A6A4YYV7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YYV7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.320e-6
Identity = 26/76 (34.21%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:    1 YTNLRHKFLRRKSAHQRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNLARGL 228
            YT  RH FL R    Q T+++  +PK++R+ + L  Y   L+PG V  VHI  +   L   +  R+ +L  L R +
Sbjct:  164 YTTRRHAFLSRDLLQQYTVLINDLPKDLRTHATLDAYLEALFPGNVDAVHITMECRALEAKVAARKAMLTKLERAM 239
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A068RWR6_9FUNG (Duf221-domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RWR6_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 2.240e-5
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:    1 YTNLRHKFLRR--KSAHQRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNL 216
            Y  LR +FL R  K+   RT++V G+P ++RSD KL  YF  L  G V +VHI + L  L   I++R   L  L
Sbjct:  200 YVRLRREFLLRIAKTVPARTVLVTGIPPQLRSDRKLAEYFEKLGIGVVESVHIVRHLDRLMDYIKERAQYLRRL 273
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A1X2ISG8_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ISG8_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 3.080e-5
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    1 YTNLRHKFLRRKSAH--QRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNL 216
            Y  +R ++L + S     R+++V G+P E+R+D  L TYF TL  G VV+ H+ + +  L  ++R+R   LD L
Sbjct:  232 YVYMRARYLMQLSGTLVSRSVIVTGLPVELRTDQALATYFETLGIGVVVSCHVVRHVKKLGHILRKRARALDKL 305
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A8H7Q644_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q644_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 4.190e-5
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   49 RTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNL 216
            RT++V G+P E+RSD KL  YF +L  G V +VH+ + +  L  LIR+R   L  L
Sbjct:  234 RTVMVTGIPPELRSDRKLAEYFESLGLGVVESVHVVKHVSQLSELIRERARCLRRL 289
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A485L132_9STRA (Aste57867_14295 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L132_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 5.700e-5
Identity = 22/76 (28.95%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 YTNLRHKFLRRKSAHQRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNLARGL 228
            Y   RH+FLRR    Q T++++ +P+ +R+ + L  Y   L+P ++  V +  +  ++ + IR+R  V+  L R +
Sbjct:  190 YVARRHEFLRRDGLQQYTVMIDDLPRRLRTPTALDKYMRALFPDKIDAVVVALECRHVEKQIRRRVAVVTQLERAM 265
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A8H7PZ65_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PZ65_MORIS)

HSP 1 Score: 49.3 bits (116), Expect = 5.730e-5
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   49 RTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNL 216
            RT++V G+P E+RSD KL  YF  L  G V +VH+ + +  L  LIR+R   L  L
Sbjct:  215 RTVMVTGIPAELRSDRKLAEYFEGLGLGVVESVHVVKHVSQLSELIRERASCLRKL 270
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BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Match: A0A163JJP8_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JJP8_ABSGL)

HSP 1 Score: 49.3 bits (116), Expect = 5.760e-5
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   49 RTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVHIPQDLWYLRRLIRQRQGVLDNL 216
            R++VV G+P+E+R+D  L  YF  L  G VV+ HI + +  L  ++RQR   LD L
Sbjct:  250 RSVVVTGLPEELRTDEALADYFENLGVGVVVSCHIVRHVKKLGHILRQRARALDRL 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146731.3172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FQJ6_ECTSI1.920e-3281.58Early-responsive to dehydration protein-related n=... [more]
A0A7S3UXJ8_HETAK1.400e-1350.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6A4YYV7_9STRA1.320e-634.21Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A068RWR6_9FUNG2.240e-541.89Duf221-domain-containing protein n=2 Tax=Lichtheim... [more]
A0A1X2ISG8_9FUNG3.080e-536.49Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]
A0A8H7Q644_9FUNG4.190e-544.64Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A485L132_9STRA5.700e-528.95Aste57867_14295 protein n=1 Tax=Aphanomyces stella... [more]
A0A8H7PZ65_MORIS5.730e-544.64Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A163JJP8_ABSGL5.760e-542.86Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146731contigH-elongata_contig146731:612..1520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D7FQJ6
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.4871962-CDS-H-elongata_contig146731:611..7041622929871.4871962-CDS-H-elongata_contig146731:611..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146731 612..704 -
1691679189.8413827-CDS-H-elongata_contig146731:611..7041691679189.8413827-CDS-H-elongata_contig146731:611..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146731 612..704 -
1622929871.5037022-CDS-H-elongata_contig146731:1385..15201622929871.5037022-CDS-H-elongata_contig146731:1385..1520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146731 1386..1520 -
1691679189.850354-CDS-H-elongata_contig146731:1385..15201691679189.850354-CDS-H-elongata_contig146731:1385..1520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146731 1386..1520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146731.3172.1prot_H-elongata_contig146731.3172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146731 612..1520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146731.3172.1

>prot_H-elongata_contig146731.3172.1 ID=prot_H-elongata_contig146731.3172.1|Name=mRNA_H-elongata_contig146731.3172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
YTNLRHKFLRRKSAHQRTIVVEGVPKEMRSDSKLFTYFNTLYPGEVVNVH
IPQDLWYLRRLIRQRQGVLDNLARGL
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mRNA from alignment at H-elongata_contig146731:612..1520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146731.3172.1 ID=mRNA_H-elongata_contig146731.3172.1|Name=mRNA_H-elongata_contig146731.3172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig146731:612..1520- (Himanthalia elongata Himel1 dioecious)
TACACCAACCTTCGGCACAAGTTCTTGAGACGAAAGTCGGCGCACCAGAG
GACCATCGTGGTCGAGGGAGTTCCCAAGGAGATGCGATCAGACTCGAAGC
TCTTTACATACTTCAACACGCTATACCCCGGAGAGGTGCGCGCGCGGCGG
CTCGCGGGTTTTGTGAAGATACCATGGGATACCTTACCGGGGCTAATGTC
CCAATTCGGAGGGTTAGATTGGTTGCATATATTTTTTATATGGGCGTGGT
GGTTGTAGTCTTTGTAAGTCCGTATTACGACCTCGTGTGGATTTCCGGTC
CGGGGTCCTCCCCGATAAAGGACGGGGCAGAGAGATGGAGGGAAGTCTGT
CATCACGACGCTCTACTCGGCCATTTACCCCGCTCTCGTGATTCTCTATG
GATATCTGTCTCTGTAACGTGGTTCATGCAGTGCATCTTCGTATTATAGT
AGTATTACCGTTCGGAGCGCCCAAGTAGGGGAGCCGGTAGAAATCTCGGG
CTGTCGAGGCTGTCGAGAAACGGGGGAGGGCTATTAAGAGCGTTTTTTGC
TTTTTGTTTATACAGATTTGTTTTCTGGACAGGACGTGTGTATTTGTGTT
TGTGTGTGTTTTCGTGCCTTGTGCCTTGAACGAGAGCAGTATGAGTGAAT
ACGTTCATTCAAGCACCGCATCAATGGGACCACGAAGCCTCCTCTGCCAG
AGCGATTTCACTTGCTTGTTTCTTTTTCGGTTTTACCACCCGAGGTTGGG
CATCAAGGACACACGATACTACACATCCCGCTTTCGCTTTCGATTTCGCT
TTTTTGCGGCGTCCAGGTAGTAAACGTGCACATACCCCAGGACCTGTGGT
ACCTTCGGCGGCTCATCCGCCAGAGGCAAGGAGTTCTCGACAACCTTGCG
AGGGGTCTG
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Coding sequence (CDS) from alignment at H-elongata_contig146731:612..1520-

>mRNA_H-elongata_contig146731.3172.1 ID=mRNA_H-elongata_contig146731.3172.1|Name=mRNA_H-elongata_contig146731.3172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig146731:612..1520- (Himanthalia elongata Himel1 dioecious)
TACACCAACCTTCGGCACAAGTTCTTGAGACGAAAGTCGGCGCACCAGAG
GACCATCGTGGTCGAGGGAGTTCCCAAGGAGATGCGATCAGACTCGAAGC
TCTTTACATACTTCAACACGCTATACCCCGGAGAGTACACCAACCTTCGG
CACAAGTTCTTGAGACGAAAGTCGGCGCACCAGAGGACCATCGTGGTCGA
GGGAGTTCCCAAGGAGATGCGATCAGACTCGAAGCTCTTTACATACTTCA
ACACGCTATACCCCGGAGAGGTAGTAAACGTGCACATACCCCAGGACCTG
TGGTACCTTCGGCGGCTCATCCGCCAGAGGCAAGGAGTTCTCGACAACCT
TGCGAGGGGTCTGGTAGTAAACGTGCACATACCCCAGGACCTGTGGTACC
TTCGGCGGCTCATCCGCCAGAGGCAAGGAGTTCTCGACAACCTTGCGAGG
GGTCTG
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