mRNA_H-elongata_contig146466.3163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146466.3163.1
Unique NamemRNA_H-elongata_contig146466.3163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A6H5KGH9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH9_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 8.030e-65
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:   10 QVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLFQVR 336
            +VG +TEAFFDEDFWES+DCVVNALDNV+ARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPF++ESYGSSVDP+D SIPLCTLKHHPYLIEH VHWARD FDGLFQ R
Sbjct:  413 KVGADTEAFFDEDFWESVDCVVNALDNVEARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFQSESYGSSVDPEDGSIPLCTLKHHPYLIEHTVHWARDTFDGLFQDR 521
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: U6L4X5_EIMTE (Uncharacterized protein (Fragment) n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6L4X5_EIMTE)

HSP 1 Score: 159 bits (401), Expect = 7.590e-48
Identity = 71/110 (64.55%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   10 QVGPETEA-FFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLFQVR 336
            +VGPETEA  F E FW S D ++NALDN+ AR YVD++CV F +PLLESGTLGTKGN QVV+PF T+ Y  SVDP ++SIPLCTL+H P+ IEH + WARD F GLF  R
Sbjct:   18 RVGPETEAEIFTESFWRSQDIIINALDNIQARQYVDSRCVTFTKPLLESGTLGTKGNVQVVVPFLTQCYSDSVDPPEESIPLCTLRHFPHTIEHTIEWARDLFQGLFSDR 127
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A7S3XY88_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY88_HETAK)

HSP 1 Score: 160 bits (404), Expect = 1.030e-47
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:   10 QVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLFQVR 336
            +V PETE  FD  FWE L  V NALDNV+ARLYVD +CV   RPLLESGTLG +G+TQVVLP R+ESYGSS DP +  IPLCTLK  PY +EH +HWARD F GLFQ R
Sbjct:   59 KVAPETEDVFDAAFWEGLSGVSNALDNVEARLYVDARCVRHGRPLLESGTLGVRGSTQVVLPGRSESYGSSADPPEAEIPLCTLKSFPYQVEHTIHWARDLFGGLFQAR 167
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A812WA09_9DINO (UBA1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WA09_9DINO)

HSP 1 Score: 162 bits (410), Expect = 2.120e-46
Identity = 71/107 (66.36%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    7 LQVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLF 327
            ++VGP+TE  FD+ FW+SLDCVVNALDN+ AR+YVD++CV F++PLLESGTLGTK N QVVLP  T+SYG S DP ++SIPLCT+KH P  IEH + WAR+AF+ LF
Sbjct:   12 VRVGPDTEETFDDAFWDSLDCVVNALDNIQARMYVDSRCVWFSKPLLESGTLGTKANVQVVLPKMTQSYGDSQDPPEESIPLCTVKHFPNAIEHTIEWAREAFEQLF 118
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: UPI001AA11B25 (ThiF family adenylyltransferase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001AA11B25)

HSP 1 Score: 157 bits (396), Expect = 3.740e-46
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:   10 QVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLF 327
            +VGPETE  F+EDFW SLD V NALDNV+AR YVD +CV F +PLL+SGTLGTKGNTQVVLPF TESY SS DP + S PLCTL+  P  IEH + WAR++FD LF
Sbjct:  112 KVGPETEHIFNEDFWNSLDGVTNALDNVEARTYVDRRCVFFRKPLLDSGTLGTKGNTQVVLPFITESYSSSQDPPEKSFPLCTLRSFPNRIEHTIAWARESFDTLF 217
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A7S2IEA0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IEA0_9DINO)

HSP 1 Score: 155 bits (391), Expect = 6.140e-46
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    7 LQVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLF 327
            ++VG +TE  FD+ FW SL+ VVNALDN+ AR+YVD++CV F++PLLESGTLGTK N+QVVLP+ T+SYG S DP ++SIPLCTLKH P+ IEH + WARD F+ LF
Sbjct:   29 VRVGSDTEDTFDDAFWYSLNGVVNALDNIQARMYVDSRCVWFSKPLLESGTLGTKANSQVVLPYLTQSYGDSQDPPEESIPLCTLKHFPHAIEHTIEWARDHFEQLF 135
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: U6CZA8_NEOVI (Uncharacterized protein (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6CZA8_NEOVI)

HSP 1 Score: 156 bits (395), Expect = 7.070e-46
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:   10 QVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLFQ 330
            +VGP+TE  +D+DF+++LD V NALDNVDAR+Y+D +CV + +PLLESGTLGTKGN QVV+PF TESY SS DP + SIP+CTLK+ P  IEH + WARD F+GLF+
Sbjct:   18 RVGPDTERIYDDDFFQNLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFK 124
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A397GU71_9GLOM (E1 ubiquitin-activating enzyme n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GU71_9GLOM)

HSP 1 Score: 167 bits (423), Expect = 8.400e-46
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 YLLQVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLFQV 333
            Y  +VGPETE  F++DF+ESLDCV NALDNVDAR Y+D +CV F RPLLESGTLGTKGNTQVV+P+ TESY SS DP + SIP+CTLK+ P  IEH + WARD F+GLF++
Sbjct:  508 YQDRVGPETENVFNDDFFESLDCVTNALDNVDARKYMDRRCVYFRRPLLESGTLGTKGNTQVVIPYLTESYSSSQDPPERSIPICTLKNFPNAIEHTIQWARDLFEGLFKI 618
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BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A812P9Q5_9DINO (UBA1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812P9Q5_9DINO)

HSP 1 Score: 163 bits (413), Expect = 2.280e-45
Identity = 71/107 (66.36%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    7 LQVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLF 327
            ++VGP+TE  FD++FW+SLDCVVNALDN+ AR+YVD++CV F++PLLESGTLGTK N QVVLP  T+SYG S DP ++SIPLCT+KH P  IEH + WAR+AF+ LF
Sbjct:   63 VRVGPDTEDTFDDEFWDSLDCVVNALDNIQARMYVDSRCVWFSKPLLESGTLGTKANVQVVLPKMTQSYGDSQDPPEESIPLCTVKHFPNAIEHTIEWAREAFEQLF 169
[Close]
BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Match: A0A4W5KLI9_9TELE (Uncharacterized protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5KLI9_9TELE)

HSP 1 Score: 155 bits (393), Expect = 7.680e-45
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:   10 QVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHWARDAFDGLFQ 330
            +VGP+TE  +D+DF+ESL  V NALDNVDAR+Y+D +CV + +PLLESGTLGTKGN QVV+PF TESY SS DP + SIP+CTLK+ P  IEH + WARD F+GLF+
Sbjct:   25 RVGPDTERVYDDDFFESLHGVANALDNVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFK 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146466.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH9_9PHAE8.030e-6588.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
U6L4X5_EIMTE7.590e-4864.55Uncharacterized protein (Fragment) n=1 Tax=Eimeria... [more]
A0A7S3XY88_HETAK1.030e-4767.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812WA09_9DINO2.120e-4666.36UBA1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
UPI001AA11B253.740e-4668.87ThiF family adenylyltransferase n=1 Tax=Escherichi... [more]
A0A7S2IEA0_9DINO6.140e-4664.49Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
U6CZA8_NEOVI7.070e-4664.49Uncharacterized protein (Fragment) n=1 Tax=Neoviso... [more]
A0A397GU71_9GLOM8.400e-4668.47E1 ubiquitin-activating enzyme n=1 Tax=Diversispor... [more]
A0A812P9Q5_9DINO2.280e-4566.36UBA1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A4W5KLI9_9TELE7.680e-4565.42Uncharacterized protein n=1 Tax=Hucho hucho TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146466contigH-elongata_contig146466:138..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score163.3
Seed ortholog evalue6.6e-38
Seed eggNOG ortholog109760.SPPG_04797T0
Preferred nameUBA1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004839,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0008641,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016874,GO:0016877,GO:0017076,GO:0019538,GO:0019941,GO:0030163,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0070647,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Belongs to the ubiquitin-activating E1 family
EggNOG OGs38C42@33154,3NURC@4751,COG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.737561-CDS-H-elongata_contig146466:137..3201622929870.737561-CDS-H-elongata_contig146466:137..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146466 138..320 +
1691679189.6136394-CDS-H-elongata_contig146466:137..3201691679189.6136394-CDS-H-elongata_contig146466:137..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146466 138..320 +
1622929870.7586544-CDS-H-elongata_contig146466:788..9471622929870.7586544-CDS-H-elongata_contig146466:788..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146466 789..947 +
1691679189.6237648-CDS-H-elongata_contig146466:788..9471691679189.6237648-CDS-H-elongata_contig146466:788..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146466 789..947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146466.3163.1prot_H-elongata_contig146466.3163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146466 138..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146466.3163.1

>prot_H-elongata_contig146466.3163.1 ID=prot_H-elongata_contig146466.3163.1|Name=mRNA_H-elongata_contig146466.3163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
YLLQVGPETEAFFDEDFWESLDCVVNALDNVDARLYVDTKCVDFARPLLE
SGTLGTKGNTQVVLPFRTESYGSSVDPDDDSIPLCTLKHHPYLIEHAVHW
ARDAFDGLFQVRGG
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mRNA from alignment at H-elongata_contig146466:138..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146466.3163.1 ID=mRNA_H-elongata_contig146466.3163.1|Name=mRNA_H-elongata_contig146466.3163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at H-elongata_contig146466:138..947+ (Himanthalia elongata Himel1 dioecious)
TATTTACTGCAGGTTGGCCCCGAAACGGAAGCTTTTTTCGACGAGGACTT
CTGGGAGTCGCTCGACTGCGTGGTGAACGCCCTCGACAACGTCGACGCTC
GCCTGTACGTAGACACCAAGTGCGTCGACTTCGCGCGGCCCCTGCTTGAG
TCCGGCACTTTGGGCACCAAGGGCAACACTCAGGTGAAATGGATCCAGAA
AAATAACATCCTGTCTGTTCTGTATTTAGCCCCCAACCGAGATGGAAAAC
GGGGGGACTTTTCCGGGATGGCACGATAACCAGCAAAACGAACAAAAATG
TCATAGGTCGATGGGCCACAAGGTGTTTGACTAAATTGGGAAGGGGGTAT
TAATGACCAAGAGGGGGGGGAGAGGGGCGACGCCTGTTGTTCAGACTCCT
TCAATCCCCCAAATTATTTTATTGGCTATCCGCAAAGTTTATCAACGCCC
CCATTTTCCCTTGCCTTCCTTTTCCCAATGTTTCCCTCGCCTACTCTCTC
CTTGAACGCCATTTATTTTCCCCCCTCGTTGACGACGCCTGCCACGGTGT
TCGGGGTTCTGTCTTATCTGTCTGTTGGTTGCTGTGCTGCACTGTATTTG
TGTAGATGCGTGCTGGCTGACCCTGGTGTGTGCAAGCCGTTTCGTCTTCA
GGTGGTTCTTCCTTTCCGAACGGAGTCTTACGGTAGCAGCGTCGATCCGG
ACGACGATTCCATCCCCCTGTGCACTCTCAAGCATCATCCCTACCTGATC
GAGCACGCCGTACACTGGGCGAGAGATGCCTTCGACGGCCTCTTCCAGGT
ACGCGGTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig146466:138..947+

>mRNA_H-elongata_contig146466.3163.1 ID=mRNA_H-elongata_contig146466.3163.1|Name=mRNA_H-elongata_contig146466.3163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig146466:138..947+ (Himanthalia elongata Himel1 dioecious)
TATTTACTGCAGGTTGGCCCCGAAACGGAAGCTTTTTTCGACGAGGACTT
CTGGGAGTCGCTCGACTGCGTGGTGAACGCCCTCGACAACGTCGACGCTC
GCCTGTACGTAGACACCAAGTGCGTCGACTTCGCGCGGCCCCTGCTTGAG
TCCGGCACTTTGGGCACCAAGGGCAACACTCAGTATTTACTGCAGGTTGG
CCCCGAAACGGAAGCTTTTTTCGACGAGGACTTCTGGGAGTCGCTCGACT
GCGTGGTGAACGCCCTCGACAACGTCGACGCTCGCCTGTACGTAGACACC
AAGTGCGTCGACTTCGCGCGGCCCCTGCTTGAGTCCGGCACTTTGGGCAC
CAAGGGCAACACTCAGGTGGTTCTTCCTTTCCGAACGGAGTCTTACGGTA
GCAGCGTCGATCCGGACGACGATTCCATCCCCCTGTGCACTCTCAAGCAT
CATCCCTACCTGATCGAGCACGCCGTACACTGGGCGAGAGATGCCTTCGA
CGGCCTCTTCCAGGTACGCGGTGGTGTGGTTCTTCCTTTCCGAACGGAGT
CTTACGGTAGCAGCGTCGATCCGGACGACGATTCCATCCCCCTGTGCACT
CTCAAGCATCATCCCTACCTGATCGAGCACGCCGTACACTGGGCGAGAGA
TGCCTTCGACGGCCTCTTCCAGGTACGCGGTGGT
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