mRNA_H-elongata_contig14641.3160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14641.3160.1
Unique NamemRNA_H-elongata_contig14641.3160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A6N2M2F6_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2M2F6_SALVM)

HSP 1 Score: 62.4 bits (150), Expect = 3.390e-8
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  250 GKFKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNL 516
            G F   + +   + ++P  W   +G +  P+L K AIR+ S   ++ G ERNW ++  +   K  R++ +R   LVFVR NLK+Q +NL
Sbjct:  519 GDFGTTLAIRQREKLNPVSWWEQFGNV-TPELQKFAIRVLSQCCSATGCERNWSVFEHIHSKKRNRLEHKRLNDLVFVRYNLKIQQRNL 606          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: UPI00092ED33F (uncharacterized protein LOC109339874 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092ED33F)

HSP 1 Score: 62.0 bits (149), Expect = 4.090e-8
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  256 FKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNLL 519
            F   V +     + P  W  +YG  G P+L ++AIR+ S  ++S+G ERNW ++  +   K  R++ ++   LV+VR NL+LQ +N L
Sbjct:  246 FGRQVAIRERTTVRPDQWWESYG-CGAPNLQQLAIRILSQTYSSSGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRNRL 332          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: UPI00092EBF14 (uncharacterized protein LOC109333050 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EBF14)

HSP 1 Score: 58.9 bits (141), Expect = 3.530e-7
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  256 FKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNLL 519
            F   V +     + P  W  +YG  G P+L ++AIR+ S   +++G ERNW ++  +   K  R++ ++   LV+VR NL+LQ +N L
Sbjct:  105 FGRQVAIRERTTVRPDQWWESYG-CGAPNLQQLAIRILSQTCSASGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRNRL 191          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A6N2KIC4_SALVM (BED-type domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KIC4_SALVM)

HSP 1 Score: 59.3 bits (142), Expect = 3.920e-7
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  250 GKFKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNL 516
            G F   + +   + ++P  W   +G I  P+L K AIR+ S   ++ G ERNW ++  +      R++ +R   LVFVR NLK+Q +N+
Sbjct:  469 GLFGVTIAIRQREKLNPVSWWEQFG-IDTPELQKFAIRVLSQCCSATGCERNWSVFEFIHSKNRNRLEHKRLNDLVFVRYNLKIQQRNM 556          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A6N2K340_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K340_SALVM)

HSP 1 Score: 58.2 bits (139), Expect = 9.620e-7
Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 1
Query:  250 GKFKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNL 516
            G F   + +     ++P  W   +G    P+L K AIR+ S   ++ G ERNW ++  +   K  R++ +R   LVFVR N+K+Q +NL
Sbjct:  464 GDFGISLAIRQRAKLNPVSWWEQFGN-DTPELQKFAIRVLSQCCSAIGCERNWSVFEYIHSKKQNRLEHKRLNDLVFVRYNIKIQQRNL 551          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A811N9V5_9POAL (Hypothetical protein n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A811N9V5_9POAL)

HSP 1 Score: 57.8 bits (138), Expect = 1.380e-6
Identity = 30/89 (33.71%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  250 GKFKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNL 516
            G F   + +   + ++P  W   +G  G  +L ++AIR+ S   ++ G ER+W  + D+   K +R++  R   +VFVR NLKLQ++NL
Sbjct:  740 GDFGLPIAIRQREKLNPVAWWDNFGN-GTIELQRLAIRVLSQCCSATGCERSWDTFKDLHSRKLSRLERSRLSDVVFVRYNLKLQERNL 827          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A6N2KDR5_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KDR5_SALVM)

HSP 1 Score: 57.4 bits (137), Expect = 1.800e-6
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 1
Query:  226 CQYSLYK--IGKFKCHVVLSFAQNMSPADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNL 516
            CQ   YK   G F   + +   + ++P  W   +G     +L K AIR+ S   ++ G ERNW ++  +   +  R++ +R   LVFVR NL++Q +NL
Sbjct:  503 CQLEEYKKATGDFGMALAIHQREKLNPVAWWEQFGN-DTQELQKFAIRVLSQCCSATGCERNWSVFEFIHSKRRNRLEHKRLNDLVFVRYNLRIQQRNL 600          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A2K3K1Y4_TRIPR (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K1Y4_TRIPR)

HSP 1 Score: 54.3 bits (129), Expect = 2.570e-6
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  304 DWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKN 513
             W   YG    P+L K+AIR+ S   +++G ERNW ++  +   K  R++ ++   LVFVR NL+LQ++N
Sbjct:    2 QWWEMYGTEA-PNLKKLAIRILSQTCSASGCERNWSVFEHIHSKKRNRLEHQKLNDLVFVRYNLRLQNRN 70          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: UPI00092F4EA0 (uncharacterized protein LOC109333975 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F4EA0)

HSP 1 Score: 56.2 bits (134), Expect = 3.890e-6
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  304 DWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNLL 519
             W  TYG    P+L K+A+R+ S   +++G ERNW ++  +   K  R++ ++   LVFVR NL+LQ +N L
Sbjct:  248 QWWETYG-CRAPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQRNHL 318          
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Match: A0A6A5M7K7_LUPAL (Phosphopyruvate hydratase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7K7_LUPAL)

HSP 1 Score: 56.2 bits (134), Expect = 4.570e-6
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  298 PADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARMDPERARKLVFVRANLKLQDKNLL 519
            P  W  TYG    P+L K+A+R+ S   +++G ERNW ++  +   K  R++ ++   LVFVR NL+LQ ++ L
Sbjct:  676 PDQWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQRSHL 748          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14641.3160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6N2M2F6_SALVM3.390e-834.83Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
UPI00092ED33F4.090e-835.23uncharacterized protein LOC109339874 n=1 Tax=Lupin... [more]
UPI00092EBF143.530e-734.09uncharacterized protein LOC109333050 n=2 Tax=Lupin... [more]
A0A6N2KIC4_SALVM3.920e-733.71BED-type domain-containing protein n=1 Tax=Salix v... [more]
A0A6N2K340_SALVM9.620e-733.71Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A811N9V5_9POAL1.380e-633.71Hypothetical protein n=2 Tax=Andropogoneae TaxID=1... [more]
A0A6N2KDR5_SALVM1.800e-632.32Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A2K3K1Y4_TRIPR2.570e-638.57Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI00092F4EA03.890e-638.89uncharacterized protein LOC109333975 n=1 Tax=Lupin... [more]
A0A6A5M7K7_LUPAL4.570e-637.84Phosphopyruvate hydratase n=1 Tax=Lupinus albus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14641contigH-elongata_contig14641:6923..7444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog4096.XP_009763280.1
EggNOG free text desc.Protein of unknown function (DUF 659)
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GF5M@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.482309-CDS-H-elongata_contig14641:6922..74441622929870.482309-CDS-H-elongata_contig14641:6922..7444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14641 6923..7444 +
1691679189.53463-CDS-H-elongata_contig14641:6922..74441691679189.53463-CDS-H-elongata_contig14641:6922..7444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14641 6923..7444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14641.3160.1prot_H-elongata_contig14641.3160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14641 6923..7444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14641.3160.1

>prot_H-elongata_contig14641.3160.1 ID=prot_H-elongata_contig14641.3160.1|Name=mRNA_H-elongata_contig14641.3160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
NAKHRKYIHSPMLSAAYTLDPEYRGQDMSDIDGGQVLLDLHTLYERLLIH
HGDDSPAAIKAASQESRGGPVARAACQYSLYKIGKFKCHVVLSFAQNMSP
ADWLVTYGKIGLPDLAKVAIRMTSTVHASAGSERNWGLYGDVMGGKHARM
DPERARKLVFVRANLKLQDKNLL*
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mRNA from alignment at H-elongata_contig14641:6923..7444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14641.3160.1 ID=mRNA_H-elongata_contig14641.3160.1|Name=mRNA_H-elongata_contig14641.3160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig14641:6923..7444+ (Himanthalia elongata Himel1 dioecious)
AACGCGAAGCATCGCAAGTACATCCACTCTCCCATGCTCTCCGCTGCCTA CACTCTTGACCCCGAGTACCGTGGCCAGGACATGTCCGACATCGATGGAG GGCAGGTCCTGCTGGACTTGCACACCTTGTACGAACGGCTCCTGATCCAC CATGGCGACGACTCCCCGGCAGCCATCAAAGCCGCAAGCCAAGAGTCACG CGGGGGACCGGTGGCGAGGGCAGCATGCCAGTATAGTCTCTACAAGATCG GCAAGTTTAAGTGCCACGTGGTCTTGTCGTTCGCCCAGAACATGTCCCCC GCAGACTGGTTGGTAACGTACGGAAAGATCGGCCTGCCGGACTTAGCCAA AGTAGCCATTCGCATGACTTCAACGGTACATGCATCGGCAGGATCGGAGC GCAATTGGGGCCTGTACGGAGATGTCATGGGGGGAAAGCACGCACGGATG GACCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGGCTAACCTGAAGCT GCAGGATAAAAATTTACTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14641:6923..7444+

>mRNA_H-elongata_contig14641.3160.1 ID=mRNA_H-elongata_contig14641.3160.1|Name=mRNA_H-elongata_contig14641.3160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig14641:6923..7444+ (Himanthalia elongata Himel1 dioecious)
AACGCGAAGCATCGCAAGTACATCCACTCTCCCATGCTCTCCGCTGCCTA
CACTCTTGACCCCGAGTACCGTGGCCAGGACATGTCCGACATCGATGGAG
GGCAGGTCCTGCTGGACTTGCACACCTTGTACGAACGGCTCCTGATCCAC
CATGGCGACGACTCCCCGGCAGCCATCAAAGCCGCAAGCCAAGAGTCACG
CGGGGGACCGGTGGCGAGGGCAGCATGCCAGTATAGTCTCTACAAGATCG
GCAAGTTTAAGTGCCACGTGGTCTTGTCGTTCGCCCAGAACATGTCCCCC
GCAGACTGGTTGGTAACGTACGGAAAGATCGGCCTGCCGGACTTAGCCAA
AGTAGCCATTCGCATGACTTCAACGGTACATGCATCGGCAGGATCGGAGC
GCAATTGGGGCCTGTACGGAGATGTCATGGGGGGAAAGCACGCACGGATG
GACCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGGCTAACCTGAAGCT
GCAGGATAAAAATTTACTCTGAAACGCGAAGCATCGCAAGTACATCCACT
CTCCCATGCTCTCCGCTGCCTACACTCTTGACCCCGAGTACCGTGGCCAG
GACATGTCCGACATCGATGGAGGGCAGGTCCTGCTGGACTTGCACACCTT
GTACGAACGGCTCCTGATCCACCATGGCGACGACTCCCCGGCAGCCATCA
AAGCCGCAAGCCAAGAGTCACGCGGGGGACCGGTGGCGAGGGCAGCATGC
CAGTATAGTCTCTACAAGATCGGCAAGTTTAAGTGCCACGTGGTCTTGTC
GTTCGCCCAGAACATGTCCCCCGCAGACTGGTTGGTAACGTACGGAAAGA
TCGGCCTGCCGGACTTAGCCAAAGTAGCCATTCGCATGACTTCAACGGTA
CATGCATCGGCAGGATCGGAGCGCAATTGGGGCCTGTACGGAGATGTCAT
GGGGGGAAAGCACGCACGGATGGACCCCGAGCGTGCCAGGAAGTTGGTGT
TCGTGAGGGCTAACCTGAAGCTGCAGGATAAAAATTTACTCTGA
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